mlmm.gwas: Pipeline for GWAS Using MLMM

Pipeline for Genome-Wide Association Study using Multi-Locus Mixed Model from Segura V, Vilhjálmsson BJ et al. (2012) <doi:10.1038/ng.2314>. The pipeline include detection of associated SNPs with MLMM, model selection by lowest eBIC and p-value threshold, estimation of the effects of the SNPs in the selected model and graphical functions.

Version:	1.0.6
Depends:	R (≥ 3.3.0)
Imports:	multcompView (≥ 0.1-7), multcomp (≥ 1.4-8), coxme (≥ 2.2-5), sommer (≥ 3.2), Matrix (≥ 1.2-10)
Suggests:	knitr, rmarkdown
Published:	2019-08-05
DOI:	10.32614/CRAN.package.mlmm.gwas
Author:	Fanny Bonnafous [aut], Alexandra Duhnen [aut], Louise Gody [aut], Olivier Guillaume[aut, cre], Brigitte Mangin [aut], Prune Pegot-Espagnet [aut], Vincent Segura [aut], Bjarni J. Vilhjalmsson [aut], Clement Mabire [aut], Timothee Flutre [aut]
Maintainer:	Clement Mabire <clement.mabire at inra.fr>
License:	GPL-3
NeedsCompilation:	no
Materials:	NEWS
In views:	Agriculture
CRAN checks:	mlmm.gwas results

Documentation:

Reference manual:	mlmm.gwas.pdf
Vignettes:	GWAS pipeline manual

Downloads:

Package source:	mlmm.gwas_1.0.6.tar.gz
Windows binaries:	r-devel: mlmm.gwas_1.0.6.zip, r-release: mlmm.gwas_1.0.6.zip, r-oldrel: mlmm.gwas_1.0.6.zip
macOS binaries:	r-release (arm64): mlmm.gwas_1.0.6.tgz, r-oldrel (arm64): mlmm.gwas_1.0.6.tgz, r-release (x86_64): mlmm.gwas_1.0.6.tgz, r-oldrel (x86_64): mlmm.gwas_1.0.6.tgz
Old sources:	mlmm.gwas archive

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