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Addition of NEWS.md for the development version use “(development version)”.
This package is a collection of wrapper functions used in data pipelines connected to an Opal environment. This ‘Opal’ client is specifically designed to interact with ‘Opal Maelstrom’ distributions to perform operations on the R server side. The user must have adequate credentials. Please see Obiba website for complete documentation.
This is still a work in progress, so please let us know if you used a function before and is not working any longer.
mlstrOpalr_help() Call the help center for full documentationopal_project_create() Create a project in an Opal environment
opal_files_pull(), opal_files_push() : Download/Upload files from/to an Opal environment.
opal_tables_pull(), opal_tables_push() : Download/Upload tables from/to an Opal project as a dossier.
taxonomy_opal_get() : Get available taxonomies in format used by Opal
taxonomy_opal_mlstr_get(): Get available taxonomies in format used by Maelstrom Research
data_dict_opalr_fix() Transform a data dictionary object from ‘opalr’ format to Opal format
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.