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Comprehensive analytical tools are provided to characterize infectious disease superspreading from contact tracing surveillance data. The underlying theoretical frameworks of this toolkit include branching process with transmission heterogeneity (Lloyd-Smith et al. (2005) <doi:10.1038/nature04153>), case cluster size distribution (Nishiura et al. (2012) <doi:10.1016/j.jtbi.2011.10.039>, Blumberg et al. (2014) <doi:10.1371/journal.ppat.1004452>, and Kucharski and Althaus (2015) <doi:10.2807/1560-7917.ES2015.20.25.21167>), and decomposition of reproduction number (Zhao et al. (2022) <doi:10.1371/journal.pcbi.1010281>).
Version: | 0.1-3 |
Depends: | R (≥ 3.0.0) |
Imports: | Delaporte |
Published: | 2023-09-07 |
DOI: | 10.32614/CRAN.package.modelSSE |
Author: | Shi Zhao [aut, cre] |
Maintainer: | Shi Zhao <zhaoshi.cmsa at gmail.com> |
License: | GPL-3 |
NeedsCompilation: | no |
In views: | Epidemiology |
CRAN checks: | modelSSE results |
Reference manual: | modelSSE.pdf |
Package source: | modelSSE_0.1-3.tar.gz |
Windows binaries: | r-devel: modelSSE_0.1-3.zip, r-release: modelSSE_0.1-3.zip, r-oldrel: modelSSE_0.1-3.zip |
macOS binaries: | r-release (arm64): modelSSE_0.1-3.tgz, r-oldrel (arm64): modelSSE_0.1-3.tgz, r-release (x86_64): modelSSE_0.1-3.tgz, r-oldrel (x86_64): modelSSE_0.1-3.tgz |
Old sources: | modelSSE archive |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.