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mumarinex

The ‘mumarinex’ package aims to facilitate the computation of the multivariate marine recovery index, providing functions for data visualization and ecological diagnostics of marine ecosystems. The computational details are described in the original publication (please, see below for reference).

Installation

You can install the development version of mumarinex from CRAN or from GitHub, respectively with:

install.packages("mumarinex") # CRAN
devtools::install_github("Nathan-Chauvel/mumarinex") # GitHub

Functions of the mumarinex package

Name Short description
decomplot() Generates a graphical representation of MUMARINEX sub-indices.
diagnostic_tool() Identifies, for each sub-index, the species/taxa that most contribute to its variation..
mumarinex() Computes the MUMARINEX index and its sub-indices (SCSR, CBCS, and SPI).
mum_GUI() Launch the online Graphical User Interface to compute the MUMARINEX index and its sub-indices.

Reference

Chauvel, N., Grall, J., Thiébaut, E., Houbin, C., Pezy, J.-P., 2026. A general-purpose multivariate marine recovery index (MUMARINEX) for quantifying the influence of human activities on benthic habitat ecological status. Ecological Indicators 188, 115002. https://doi.org/10.1016/j.ecolind.2026.115002

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.