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myClim 1.5.0

• The new function mc_prep_expandtime has been added to expand time series to shorter steps.

myClim 1.4.5

• Empty calibration parameters are now removed from joined data in the mc_join function.

myClim 1.4.4

• The mc_read_data function now skips empty data files.
• The minimum required R version is now 4.0.

myClim 1.4.3

• The new function mc_info_calib has been added to provide an overview of the calibration parameters.
• The output table of the mc_info function has been extended with the height and calibrated columns.
• The mc_prep_calib function skips sensors that are already calibrated.

myClim 1.4.2

• Only one logger can be used for uncleaned data in the mc_reshape_wide function.
• The raw indexes are loaded from TOMST files to logger metadata.
• The new function mc_prep_delete has been added.
• The loggers parameter has been added to the mc_filter function.
• The sensor without states in the mc_plot_line function has been fixed.
• The missing states in mc_states_join have been fixed.
• The new parameter older_newer_suffix has been added to the mc_states_join function.
• The multiple parameters can be combined in the mc_filter function, if reverse is TRUE.
• The unexistent tag issue in the mc_states_replace function has been fixed.

myClim 1.4.1

• The calculated sensor in mc_states_join issue has been fixed.

myClim 1.4.0

• The save localities unit test has been fixed.
• CRAN version.

myClim 1.3.11

• The numbers in the TOMS_join format can be in scientific notation.

myClim 1.3.10

• The environment mc_read_problems with vroom parse problems has been added.

myClim 1.3.9

• The clean_conflict states issue in the mc_prep_clean function has been fixed.
• The NA values in the mc_prep_TMSoffsoil function have been fixed.

myClim 1.3.8

• The tag parameter has been added to the mc_plot_line function.

myClim 1.3.7

• The uninitialsed date_format warning in the mc_read_data function has been fixed.
• The cropt_table parameter has been added to the mc_prep_crop function.
• The start and end parameters in the mc_prep_crop function can be only single value.
• The crop_margins_NA parameter has been added to the mc_states_replace function.

myClim 1.3.6

• A new function mc_save_localities has been added.
• The function mc_load can load multiple files.
• The function mc_load can load all .RDS files in a directory.
• The warnings about missing sensors have been removed.

myClim 1.3.5

• The logger_name is used in the mc_states_join function instead of the logger_index as value in the states table.
• The result of mc_prep_TMSoffsoil function has been changed to TRUE/FALSE instead of 1/0.

myClim 1.3.4

• The logger_name is used in myClim object instead of the logger_index.
• The logger_name is visible in mc_plot_line.
• The show_logger_name parameter has been added to the mc_reshape_wide function.
• The serias_name label changed to series in mc_plot_line.
• The progress bar is added to mc_prep_crop.
• The mc_prep_clean step warning is fixed.

myClim 1.3.3

• A performance issue in the mc_prep_crop function has been fixed.
• The parameters tolerance and by_type have been added to the mc_join function.
• The class mc_LocalityMetadata has been extended with the join_serial slot.
• The new function mc_states_join has been added.
• The function mc_info_join has been deleted.

myClim 1.3.2

• The parameter tolerance has been added to the mc_prep_clean function.
• The result table of the mc_info_clean function has been extended with the logger_index column.
• The plot colors of sensors have been updated.
• The colors issue in the mc_plot_line function has been fixed.

myClim 1.3.1

• The conflict state issue in the mc_prep_clean function has been fixed.

myClim 1.3.0

• Published on CRAN.

myClim 1.2.6

• New functions mc_info_range and mc_states_outlier have been added.

myClim 1.2.5

• The issue with the HOBO logger_type in the mc_read_data function has been fixed.

myClim 1.2.4

• The multiple custom date formats issue for HOBO logger in the mc_read_data function has been fixed.

myClim 1.2.3

• It is possible to define multiple custom date formats in the mc_read_data function.

myClim 1.2.2

• The issue in the mc_join function with the use always newer logger option has been fixed.

myClim 1.2.1

• The new functions mc_states_from_sensor and mc_states_to_sensor have been added.

myClim 1.2.0

• The color palette of mc_plot_line function has been extended.

myClim 1.1.6

• New function mc_states_replace has been added.

myClim 1.1.5

• Updated the color palette of mc_plot_line for greater differentiation between values.

myClim 1.1.4

• Fixed the issue with the joined series of loggers in the mc_plot_line function.
• Added a new parameter color_by_logger to the mc_plot_line function.
• Added a new parameter logger_types to the mc_filter function.

myClim 1.1.3

• Fixed reading of TOMST Thermologger data CSV. The data format has changed in the new version of Lolly.

myClim 1.1.2

• The mc_prep_clean function now selects a conflicted value based on the best match with the new rounded date and time.
• A new parameter, resolve_conflicts, has been added to the mc_prep_clean function to allow checking uncleaned data.
• Fixed the round-off issue of datetimes in states when an unconventional step is used.

myClim 1.1.1

• New functions mc_info_states, mc_states_insert, mc_states_update, and mc_states_delete have been added.
• The mc_agg function now rounds states by period.

myClim 1.1.0

• Fixed an issue with the read progress bar when some files were skipped.
• Changed the logger type HOBO to HOBO_U23-001A.
• Added support for the logger type HOBO_U23-004.

myClim 1.0.19

• Fixed an issue that affected the calibration table after calling the mc_join() function.
• Added a file counter to the mc_plot_loggers() function.

myClim 1.0.18

• Fixed temperature drift correction in the mc_calc_vwc() function.
• Resolved the issue where the vroom::problems() function did not function properly when tidyverse was imported. This is now handled in the read functions.
• Disabled progress bar for the vroom::vroom() function.

myClim 1.0.17

• Multiple custom date formats can be defined for TOMST data format.

myClim 1.0.16

• A new function, mc_info_join(), has been added. This function attempts to join myClim objects and returns an overview of the operation.
• The skip option has been added to the mc_join() function.
• The mc_read_data() function can now read HOBO files which use a comma as the decimal separator.
• The logger index has now been added to the column name in the mc_reshape_wide() function.
• Progress bars have been added to the mc_read_data(), mc_prep_clean(), mc_join(), and mc_agg() functions.
• When new sensors are created from a custom function in the mc_agg() function, they now inherit the sensor_id from the parent sensors.
• If a wrong physical unit is input into the calc functions, it will now result in a warning instead of an error.

myClim 1.0.15

• when reading TOMST_join format (internal TOMST data format used by IBOT researchers) the mc_read_data() function now uses the Thermo value of the logger_type parameter when reading TOMST Termo Logger and does not detect the type of the logger from the data.
• A new function, mc_info_logger(), has been added. This function returns an overview table of loggers in myClim Raw-format.
• The issue with NA values in the mc_join() function has been fixed.
• The issue with always choices in the mc_join() function has been fixed.
• The TRUE value in TOMST_join is now correctly detected.
• The mc_join() function does not fail if a wrong logger type is defined.

myClim 1.0.14

• The function mc_read_data() now skips non-existent files.
• The length() function now returns the number of localities for myClim object.
• Detection of TOMST_join format is now fixed for negative values of moisture.

myClim 1.0.13

• The issue of NA values at the beginning of TOMST_join format data files has been resolved.

myClim 1.0.12

• A new facet parameter has been added to the mc_plot_line() function to provide more flexibility in data visualization.
• The y-axis labels for Boolean sensors in the mc_plot_line() function have been updated to TRUE and FALSE.
• The function mc_calib_moisture() now produces renamed results to enhance consistency.
• The manual and vignettes have been enhanced to provide more comprehensive and user-friendly documentation.

myClim 1.0.11

• The reading of TOMST data with a comma decimal separator was incorrect in the 1.0.9 and 1.0.10 versions. This error has been fixed.

myClim 1.0.10

• Dependency on the package runner is removed and data.table is added as a new dependency.
• In the functions mc_read_files() and mc_read_data(), a new parameter user_data_formats is added for custom source file data formats.
• A new vignette for user data formats is added.
• A check for different values in same time is added to the function mc_prep_clean().
• A new function mc_prep_TMSoffsoil() is added for detecting when TMS is out of soil.

myClim 1.0.9

• The citation of the package has been changed to the article myClim: Microclimate data handling and standardised analyses in R.
• The reading of CSV data files is now processed by the vroom package, which provides a faster and more efficient way to read CSV data.

myClim 1.0.8

• The calibration constants for the mc_calc_vwc() function are now visible to the user under new names: mc_const_CALIB_MOIST_REF_T, mc_const_CALIB_MOIST_ACOR_T, and mc_const_CALIB_MOIST_WCOR_T.
• The sensor ID constants are now visible to the user under new names: mc_const_SENSOR_*.
• The soiltype parameter in the mc_calc_vwc() function can now be a list with user-defined parameters in the format list(a=number1, b=number2, c=number3).

myClim 1.0.7

• The temperature correction is no longer applied in the mc_calc_vwc() function when the temp_sensor value is NA.

myClim 1.0.6

• The mc_prep_crop() function now includes a new parameter localities, which allows for specific localities to be selected.
• The definitions of physicals, loggers, and sensors have been modified.
  • TMS_TMSmoisture -> TMS_moist
  • TS_T -> Thermo_T
  • DEND_T -> Dendro_T
  • DEND_TOMSTdendro -> Dendro_raw
  • HOBO_T_C -> HOBO_T
  • moisture -> VWC
  • RH_perc -> RH
  • wind -> wind_speed
  • deleted HOBO_T_F
• Data from HOBO loggers in °F are now automatically converted to °C.

myClim 1.0.5

• Metadata of a locality can now be loaded from a table using the mc_read_data() function.
• The parameter use_utc has been added to the following functions: mc_reshape_wide(), mc_reshape_long(), mc_plot_image(), mc_plot_line() and mc_plot_raster(). This parameter allows for the use of local time.

myClim 1.0.4

• Updated the print(myClim_data) function to display the metadata of the myClim object and the head of the table from mc_info().
• Enabled the use of the extraction operator [] to extract specific localities from the myClim object.

myClim 1.0.3

• Function mc_plot_raster() can plot bool type sensors, such as snow.

myClim 1.0.2

• Enhanced help texts.
• Added a check in mc_prep_calib_load() to verify if the type of calib_table$datetime is POSIXct.

myClim 1.0.1

• Updated help texts to comply with CRAN rules.
• Restored options and par using the on.exit() function.
• Replaced print() with message() in the code.
• Utilized temporary directories in tests, examples, and vignettes.
• Some dontrun examples have been modified to run.
• Detection of the installed plotly package using the system.file() function.

myClim 1.0.0

• Improved the vignette.
• Added the ability to specify multiple TubeDB regions using the region parameter in the mc_read_tubedb() function, providing more flexibility in data retrieval.
• Automatically prepared the sensor_ids parameter in the mc_read_tubedb() function even if region is NULL.
• Fixed the issue with factors in the localities_table in the mc_read_data() function.
• Fixed the issue with factors in the states table in the sensor data list.
• Concluded beta testing.

myClim 0.3.1

• Deletion of duplicated items in function mc_prep_clean() is more effective.
• The parameter sensor_ids in function mc_read_tubedb() is prepared automatically if names in TubeDB are identical with names in myClim.
• Conversion of datetimes in function mc_read_tubedb() is fixed. The problem is in function rTubeDB::query_timeseries if the parameter datetimeFormat = "POSIXct" is used.
• The issue with loading data from TubeDB when the elevation is missing has been fixed.

myClim 0.3.0

• Behavior of mc_filter(data, localities="locality_abc", sensors="sensor1", reverse=TRUE) has changed. Sensor sensor1 is removed only from locality locality_abc. Other localities remain unchanged.
• Function mc_join() is fixed. Multiple sensors with the same height caused an error.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.