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List of models

knitr::kable(modeldb[, c("name", "description")])
name description
PK_1cmt One compartment PK model with linear clearance
PK_1cmt_des One compartment PK model with linear clearance using differential equations
PK_2cmt Two compartment PK model with linear clearance
PK_2cmt_des Two compartment PK model with linear clearance using differential equations
PK_2cmt_no_depot Two compartment PK model with linear clearance using differential equations
PK_2cmt_tdcl_des Two compartment PK model with time-dependent clearance using differential equations (structured like nivolumab PK model)
PK_3cmt Three compartment PK model with linear clearance
PK_3cmt_des Three compartment PK model with linear clearance using differential equations
phenylalanine_charbonneau_2021 Phenylalanine model for absorption and metabolism in healthy subjects and patients with PKU
indirect_0cpt_transitEx Two compartment PK model with Michealis-Menten clearance using differential equations
indirect_1cpt_inhi_kin One compartment indirect response model with inhibition of kin.
indirect_1cpt_inhi_kin_CLV One compartment indirect response model with inhibition of kin.
indirect_1cpt_inhi_kin_r0rmaxcrmax One compartment indirect response model with inhibition of kin.
indirect_1cpt_inhi_kout One compartment indirect response model with inhibition of kout.
indirect_1cpt_inhi_kout_CLV One compartment indirect response model with inhibition of kout.
indirect_1cpt_inhi_kout_r0rmaxcrmax One compartment indirect response model with inhibition of kout.
indirect_1cpt_stim_kin One compartment indirect response model with stimulation of kin.Parameterized using rate cosntants
indirect_1cpt_stim_kin_CLV One compartment indirect response model with stimulation of kin.
indirect_1cpt_stim_kin_r0rmaxcrmax One compartment indirect response model with stimulation of kin.
indirect_1cpt_stim_kout One compartment indirect response model with stimulation of kout.Parameterized using rate cosntants
indirect_1cpt_stim_kout_CLV One compartment indirect response model with stimulation of kout.
indirect_1cpt_stim_kout_r0rmaxcrmax One compartment indirect response model with stimulation of kout.
indirect_circ_1cpt_inhi_kin_kin_t One compartment indirect response model with inhibition of kin and circadian kin_t.
indirect_circ_1cpt_inhi_kin_kout_t One compartment indirect response model with inhibition of kin and circadian kin_t.
indirect_circ_1cpt_inhi_kout_kin_t One compartment indirect response model with inhibition of kout and circadian kin_t.
indirect_circ_1cpt_inhi_kout_kout_t One compartment indirect response model with inhibition of kout and circadian kin_t.
indirect_circ_1cpt_stim_kin_kin_t One compartment indirect response model with stimulation of kin and circadian kin_t.Parameterized using rate cosntants
indirect_circ_1cpt_stim_kin_kout_t One compartment indirect response model with stimulation of kin and circadian kout_t.Parameterized using rate constants
indirect_circ_1cpt_stim_kout_kin_t One compartment indirect response model with stimulation of kout and circadian kin_t.Parameterized using rate cosntants
indirect_circ_1cpt_stim_kout_kout_t One compartment indirect response model with stimulation of kout and circadian kout_t.Parameterized using rate cosntants
indirect_prec_1cpt_inhi_CLV One compartment precursor-dependent indirect response model with inhibition of drug response. Parameterized with clearance and volume. (effect).
indirect_prec_1cpt_inhi_r0rmaxcrmax One compartment precursor-dependent indirect response model with inhibition of drug response (effect).
indirect_prec_1cpt_stim_CLV One compartment precursor-dependent indirect response model with inhibition of drug response (effect). Parameterized with clearance and volume
indirect_prec_1cpt_stim_r0rmaxcrmax One compartment precursor-dependent indirect response model with inhibition of drug response (effect). Parameterized with clearance and volume
PK_2cmt_mAb_Davda_2014 Two compartment PK model with linear clearance for average monoclonal antibodies (Davda 2014)
PK_double_sim_01 PK double absorption model with simultaneous zero order and first order absorptions
PK_double_sim_10 PK double absorption model with simultaneous first order and zero order absorptions
PK_double_sim_11 PK double absorption model with simultaneous first order absorptions
CarlssonPetri_2021_liraglutide Liraglutide PK model in adolescents (Carlsson Petri 2021)
Cirincione_2017_exenatide Exenatide immediate-release PK model (Cirincione 2017)
Kovalenko_2020_dupilumab Dupilumab PK model (Kovalenko 2020)
Soehoel_2022_tralokinumab Tralokinumab PK model (Soehoel 2022)
Zhu_2017_lebrikizumab Lebrikizumab PK model (Zhu 2017)
oncology_sdm_lobo_2002 Signal transduction model for delayed concentration effects on cancer cell growth
oncology_xenograft_simeoni_2004 Oncology tumor growth model in xenograft models
tgi_no_sat_Koch One compartment TGI model with with exponential tumor growth, without saturation.
tgi_no_sat_expo One compartment TGI model with with exponential tumor growth, without saturation.
tgi_no_sat_linear One compartment TGI model with with linear tumor growth, without saturation.
tgi_no_sat_powerLaw One compartment TGI model with with exponential tumor growth, without saturation.
tgi_sat_VonBertalanffy One compartment TGI model where tumor growth is limited by a loss term, with saturation.
tgi_sat_genVonBertalanffy One compartment TGI model where tumor growth is limited by a loss term, with saturation.
tgi_sat_logistic One compartment TGI model with with exponential tumor growth that decelerates linearly, with saturation.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.