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test_file

🎬 Introduction

To arrive at massive documentation like this for all seven functions, Microsoft Word was leveraged.
Some hard-work is put into making a template for the first function.
The idea is to take one template and replace the function name with the MS word replace function.
This helps create massive documentation for testing functions.
All case scenarios pass and the pride factor here is these functions should yield correct column names thanks to a function called actual_cols_used().

🕵️ Normfluodat- MVP (Minimum Viable Product)

This function is considered the MVP.
This is a robust and trusted function and Users should use it.

# Normal cases dat(1-4)
fpath <- system.file("extdata", "dat_2.dat", package = "normfluodbf", mustWork = TRUE)
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40, rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40, rows_used = c('A','B','C'), interval = 30)
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40, rows_used = c('A','B','C'), interval = 60)
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40)
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3))
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'horizontal')

# Extreme cases dat(5-7)
fpath <- system.file("extdata", "dat_5.dat", package = "normfluodbf", mustWork = TRUE)
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40)
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A'), cols_used = c(1))
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A'), cols_used = c(1,2))

normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3))
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'horizontal')

🕵️ Normfluodatlite

# Normal cases dat(1-4)
fpath <- system.file("extdata", "dat_1.dat", package = "normfluodbf", mustWork = TRUE)
normalized_fluo_dat <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'hundred')
normalized_fluo_dat <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'one')
normalized_fluo_dat <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40)
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3))
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'horizontal')

# Extreme cases dat(5-7)
fpath <- system.file("extdata", "dat_5.dat", package = "normfluodbf", mustWork = TRUE)
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40)
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3))
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3))
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3))

normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3))
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluodatlite(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'horizontal')

🕵️ Normfluodatfull

# Normal cases dat(1-4)
fpath <- system.file("extdata", "dat_3.dat", package = "normfluodbf", mustWork = TRUE)
normalized_fluo_dat <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'hundred')
normalized_fluo_dat <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'one')
normalized_fluo_dat <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40)
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3))
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'horizontal')

# Extreme cases dat(5-7)
fpath <- system.file("extdata", "dat_6.dat", package = "normfluodbf", mustWork = TRUE)
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal', norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'hundred')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'one')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'z-score')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'decimal')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), norm_scale = 'raw')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40)
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3))
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluodatfull(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'horizontal')

🕵️ Normfluordat

# Normal cases dat(1-4)
fpath <- system.file("extdata", "dat_3.dat", package = "normfluodbf", mustWork = TRUE)
normalized_fluo_dat <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40)
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3))
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'horizontal')

# Extreme cases dat(5-7)
fpath <- system.file("extdata", "dat_5.dat", package = "normfluodbf", mustWork = TRUE)
normalized_fluo_dat <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), read_direction = 'horizontal')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'))
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40)
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3))
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'vertical')
normalized_fluo_dat_advv <- normfluordat(dat=fpath, tnp = 1, cycles = 40,rows_used = c('A','B','C'), cols_used = c(1,2,3), read_direction = 'horizontal')

🕵️ Normfluordbf

#normfluordbf
fpath <- system.file("extdata", "liposomes_214.dbf", package = "normfluodbf", mustWork = TRUE)
norm_dbf <- normfluordbf(fpath, norm_scale = 'raw')
norm_dbf <- normfluordbf(fpath, norm_scale = 'decimal')
norm_dbf <- normfluordbf(fpath, norm_scale = 'one')
norm_dbf <- normfluordbf(fpath, norm_scale = 'hundred')
norm_dbf <- normfluordbf(fpath, norm_scale = 'z-score')

🕵️ Norm_tidy_dbf

#norm_tidy_dbf
fpath <- system.file("extdata", "liposomes_214.dbf", package = "normfluodbf", mustWork = TRUE)
norm_dbf <- norm_tidy_dbf(fpath, norm_scale = 'raw')
norm_dbf <- norm_tidy_dbf(fpath, norm_scale = 'decimal')
norm_dbf <- norm_tidy_dbf(fpath, norm_scale = 'one')
norm_dbf <- norm_tidy_dbf(fpath, norm_scale = 'hundred')
norm_dbf <- norm_tidy_dbf(fpath, norm_scale = 'z-score')

🕵️ Time Attribute

#Time attribute
#214
time_original = time_attribute(30,8,136,1276,40)
norm_dbf = cbind(time_original,norm_dbf)
#221
time_original = time_attribute(33,8,907,2161,40)
norm_dbf = cbind(time_original,norm_dbf)
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'one', interval = 30, first_end = 8, pause_duration = 136, end_time = 1276)
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'one', interval = 33, first_end = 8, pause_duration = 0, end_time = 2161)
normalized_fluo_dat_advv <- normfluodat(dat=fpath, tnp = 3, cycles = 40,rows_used = c('A','B','C'), read_direction = 'vertical', norm_scale = 'one', interval = 33)
for (i in 1:nrow(normalized_fluo_dat_advv)) {
  for(j in 1:ncol(normalized_fluo_dat_advv))
    if(j == 1){
      normalized_fluo_dat_advv[i,j] = normalized_fluo_dat_advv[i,j] + 30
    }
}

🕵️ Visualize

#Visualize

#DAT
#z-score
ggplot_tnp(normalized_fluo_dat, c('Cycle_Number'), c('A1','B1','C1'),c(0,40),c(-1,3))

#hundred
ggplot_tnp(normalized_fluo_dat, c('Cycle_Number'), c('A1','B1','C1'),c(0,40),c(0,100))

#one
ggplot_tnp(normalized_fluo_dat, c('Cycle_Number'), c('A1','B1','C1'),c(0,40),c(0,1))

#raw & decimal (sliding scale)
ggplot_tnp(normalized_fluo_dat, c('Cycle_Number'), c('A1','B1','C1'),c(0,40),ylim = NULL)

#DBF
ggplot_tnp(norm_dbf, c('Cycle_Number'), c('A01','B01','C01'),c(0,40),ylim = NULL)
ggplot_tnp(norm_dbf, c('Time'), c('A01','B01','C01'),xlim = NULL, ylim = NULL)

🕵 Final Remarks

The MVP here is normfluodat and users should always use this function.
normfluodat will also provide the user with the option of seeing the raw file with raw fluorescence values. This also helps detect data corruption issues.
All the functions have been tested and passed almost every scenario.
This vignette is educative and indicates how testing can be done for large packages like this one.
Prompted by some failures after the update release, I got to work and noticed that this was the only way I could have a package I was proud of and that users could have the best experience.
There is room to find ways for automating this process but I am NOT working on that.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.