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A general purpose client to work with any ‘OAI-PMH’ service.
The ‘OAI-PMH’ protocol is described at http://www.openarchives.org/OAI/openarchivesprotocol.html.
The main functions follow the OAI-PMH verbs:
GetRecordIdentifyListIdentifiersListMetadataFormatsListRecordsListSetsInstall from CRAN
install.packages("oai")
Or install the development version from GitHub
devtools::install_github("ropensci/oai")
Load oai
library("oai")
id("http://oai.datacite.org/oai")
#> repositoryName baseURL protocolVersion
#> 1 DataCite MDS https://oai.datacite.org/oai 2.0
#> adminEmail earliestDatestamp deletedRecord
#> 1 support@datacite.org 2011-01-01T00:00:00Z persistent
#> granularity compression compression.1
#> 1 YYYY-MM-DDThh:mm:ssZ gzip deflate
#> description
#> 1 oaioai.datacite.org:oai:oai.datacite.org:12425
list_identifiers(from = '2018-05-01T', until = '2018-09-01T')
#> # A tibble: 2,904 x 5
#> identifier datestamp setSpec setSpec.1 setSpec.2
#> <chr> <chr> <chr> <chr> <chr>
#> 1 cbe4cdda-2045-41… 2018-08-30T… installation:842… dataset_type… country:…
#> 2 3fb7ddd8-07c0-49… 2018-08-28T… installation:842… dataset_type… country:…
#> 3 34585f24-1ffe-47… 2018-08-28T… installation:842… dataset_type… country:…
#> 4 8ac24ec8-1e7b-40… 2018-08-28T… installation:842… dataset_type… country:…
#> 5 e381b970-9b62-46… 2018-08-28T… installation:842… dataset_type… country:…
#> 6 4496b1b1-1ea9-4e… 2018-08-28T… installation:842… dataset_type… country:…
#> 7 fc5d68a6-b511-4c… 2018-08-27T… installation:73e… dataset_type… country:…
#> 8 5e0073bc-de2a-4b… 2018-08-27T… installation:688… dataset_type… country:…
#> 9 ab2684cf-62e5-4f… 2018-08-27T… installation:804… dataset_type… country:…
#> 10 34fbcf59-d9bb-47… 2018-08-27T… installation:7c5… dataset_type… country:…
#> # … with 2,894 more rows
count_identifiers()
list_records(from = '2018-05-01T', until = '2018-05-15T')
#> # A tibble: 44 x 26
#> identifier datestamp setSpec setSpec.1 setSpec.2 title publisher
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 18799ce9-… 2018-05-… instal… dataset_… country:… Bird… Sokoine …
#> 2 79f51633-… 2018-05-… instal… dataset_… country:… Impl… Aïgos SAS
#> 3 f83746ee-… 2018-05-… instal… dataset_… country:… NDFF… Dutch Na…
#> 4 a3533a61-… 2018-05-… instal… dataset_… country:… EDP … EDP - En…
#> 5 ba9b66a3-… 2018-05-… instal… dataset_… country:… Ende… Sokoine …
#> 6 78b696d9-… 2018-05-… instal… dataset_… country:… Ende… Sokoine …
#> 7 c791b255-… 2018-05-… instal… dataset_… country:… Ende… Sokoine …
#> 8 b929ccda-… 2018-05-… instal… dataset_… country:… List… Sokoine …
#> 9 da285c2a-… 2018-05-… instal… dataset_… country:… Moni… Corporac…
#> 10 87372877-… 2018-05-… instal… dataset_… country:… Moni… Corporac…
#> # … with 34 more rows, and 19 more variables: identifier.1 <chr>,
#> # subject <chr>, source <chr>, description <chr>, description.1 <chr>,
#> # type <chr>, creator <chr>, date <chr>, language <chr>, coverage <chr>,
#> # coverage.1 <chr>, format <chr>, source.1 <chr>, subject.1 <chr>,
#> # coverage.2 <chr>, creator.1 <chr>, description.2 <chr>,
#> # creator.2 <chr>, subject.2 <chr>
ids <- c("87832186-00ea-44dd-a6bf-c2896c4d09b4", "d981c07d-bc43-40a2-be1f-e786e25106ac")
get_records(ids)
#> $`87832186-00ea-44dd-a6bf-c2896c4d09b4`
#> $`87832186-00ea-44dd-a6bf-c2896c4d09b4`$header
#> # A tibble: 1 x 3
#> identifier datestamp setSpec
#> <chr> <chr> <chr>
#> 1 87832186-00ea-44dd-a6… 2018-06-29T12… installation:729a7375-b120-4e4f-bb…
#>
#> $`87832186-00ea-44dd-a6bf-c2896c4d09b4`$metadata
#> # A tibble: 0 x 0
#>
#>
#> $`d981c07d-bc43-40a2-be1f-e786e25106ac`
#> $`d981c07d-bc43-40a2-be1f-e786e25106ac`$header
#> # A tibble: 1 x 3
#> identifier datestamp setSpec
#> <chr> <chr> <chr>
#> 1 d981c07d-bc43-40a2-be… 2018-01-21T21… installation:804b8dd0-07ac-4a30-bf…
#>
#> $`d981c07d-bc43-40a2-be1f-e786e25106ac`$metadata
#> # A tibble: 1 x 12
#> title publisher identifier subject source description type creator date
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 Pece… Institut… https://w… peces,… http:… Caracteriz… Data… Fernan… 2018…
#> # … with 3 more variables: language <chr>, coverage <chr>, format <chr>
list_metadataformats(id = "87832186-00ea-44dd-a6bf-c2896c4d09b4")
#> $`87832186-00ea-44dd-a6bf-c2896c4d09b4`
#> metadataPrefix schema
#> 1 oai_dc http://www.openarchives.org/OAI/2.0/oai_dc.xsd
#> 2 eml http://rs.gbif.org/schema/eml-gbif-profile/1.0.2/eml.xsd
#> metadataNamespace
#> 1 http://www.openarchives.org/OAI/2.0/oai_dc/
#> 2 eml://ecoinformatics.org/eml-2.1.1
list_sets("http://api.gbif.org/v1/oai-pmh/registry")
#> # A tibble: 572 x 2
#> setSpec setName
#> <chr> <chr>
#> 1 dataset_type per dataset type
#> 2 dataset_type:OCCURRENCE occurrence
#> 3 dataset_type:CHECKLIST checklist
#> 4 dataset_type:METADATA metadata
#> 5 dataset_type:SAMPLING_EVENT sampling_event
#> 6 country per country
#> 7 country:AD Andorra
#> 8 country:AO Angola
#> 9 country:AR Argentina
#> 10 country:AT Austria
#> # … with 562 more rows
Identify
id("http://www.biodiversitylibrary.org/oai")
#> repositoryName
#> 1 Biodiversity Heritage Library OAI Repository
#> baseURL protocolVersion
#> 1 https://www.biodiversitylibrary.org/oai 2.0
#> adminEmail earliestDatestamp deletedRecord granularity
#> 1 oai@biodiversitylibrary.org 2006-01-01 no YYYY-MM-DD
#> description
#> 1 oaibiodiversitylibrary.org:oai:biodiversitylibrary.org:item/1000
Get records
get_records(c("oai:biodiversitylibrary.org:item/7", "oai:biodiversitylibrary.org:item/9"),
url = "http://www.biodiversitylibrary.org/oai")
#> $`oai:biodiversitylibrary.org:item/7`
#> $`oai:biodiversitylibrary.org:item/7`$header
#> # A tibble: 1 x 3
#> identifier datestamp setSpec
#> <chr> <chr> <chr>
#> 1 oai:biodiversitylibrary.org:item/7 2016-07-13T09:13:41Z item
#>
#> $`oai:biodiversitylibrary.org:item/7`$metadata
#> # A tibble: 1 x 11
#> title creator subject description publisher contributor date type
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 Die … Fleisc… Bogor;… pt.5:v.1 (… Leiden :… Missouri B… 1900… text…
#> # … with 3 more variables: identifier <chr>, language <chr>, rights <chr>
#>
#>
#> $`oai:biodiversitylibrary.org:item/9`
#> $`oai:biodiversitylibrary.org:item/9`$header
#> # A tibble: 1 x 3
#> identifier datestamp setSpec
#> <chr> <chr> <chr>
#> 1 oai:biodiversitylibrary.org:item/9 2016-07-13T09:13:41Z item
#>
#> $`oai:biodiversitylibrary.org:item/9`$metadata
#> # A tibble: 1 x 11
#> title creator subject description publisher contributor date type
#> <chr> <chr> <chr> <chr> <chr> <chr> <chr> <chr>
#> 1 Die … Fleisc… Bogor;… pt.5:v.3 (… Leiden :… Missouri B… 1906… text…
#> # … with 3 more variables: identifier <chr>, language <chr>, rights <chr>
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.