The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

omopgenerics dev

• Add cohort name to attrition and cohortCount functions by @catalamarti in #836

omopgenerics 1.4.0

• Create importCodelistWithDetails and exportCodelistWithDetails by @catalamarti in #839
• Provide better error message by @catalamarti in #834
• Use type = NULL (json + csv) by default in inport function by @catalamarti in #841
• Add methods for cdm_table (read, drop, insert, list, indexes) by @catalamarti in #837
• Assign method for cdmName by @catalamarti in #833
• Change casted to cast by @ablack3 in #814
• Allow uniqueId(n = 0) to work by @catalamarti in #842
• Add integerish argument to validateWindowArgument by @catalamarti in #844
• Create filterResult function by @catalamarti in #845
• Add argument nm to assert and validate functions to allow naming of the input by @catalamarti in #847
• Add null = FALSE argument to validateColumn by @catalamarti in #848
• Correct message for cohort_end_date < cohort_start_date by @catalamarti in #851
• Add recursive = FALSE option to import Concepts functions by @catalamarti in #854
• Create empty argument for assert and validate functions by @catalamarti in #849
• Attributes of cohort_table are not collected if not needed by @catalamarti in #857
• Create readOnly source by @catalamarti in #858
• Create compareOmopTableFields function by @catalamarti in #859
• Register result type by @catalamarti in #781
• Allow to validate codelists with the cdm by @catalamarti in #843
• Allow tidy expressions and negate expressions to work for dropSourecTable, readSourceTable, getCohortId functions by @catalamarti in #850
• Fix issues with NA in summarised_result by @catalamarti in #860
• Consistent documentation of arguments by @catalamarti in #855
• spell check by @catalamarti in #862
• add code_search by @catalamarti in #864

omopgenerics 1.3.7

• Correct typo in import concept set expression in tibble format by @catalamarti in #808
• Correctly handle different cdm versions by @catalamarti in #811, #812

omopgenerics 1.3.6

• Allow codelist and concept set import in tibble format by @catalamarti in #806

omopgenerics 1.3.5

• Eliminate repeated elements from codelists by @catalamarti in #800
• Add methods for empty concept sets by @catalamarti in #802
• Add log query to collect by @catalamarti in #804

omopgenerics 1.3.4

• Handle edge case in concept set expression import by @catalamarti in #793
• Add elapsed time calculation to log summary by @catalamarti in #795
• Remove specimen_source_concept_id from fieldTablesColumns by @catalamarti in #797
• Add methods for concept classes by @catalamarti in #796

omopgenerics 1.3.3

• Add unique argument to assertLogical() by @catalamarti in #782
• Fix non UTF-8 issues (any collected character non UTF-8 is eliminated) by @catalamarti in #778
• concept set to also import codelists by @catalamarti in #787
• logging explain is now TRUE/FALSE option to add in the same log file by @catalamarti in #785

omopgenerics 1.3.2

• Fix typo in compute timing by @edward-burn in #763
• Add stable badge by @catalamarti in #769
• Allow extraction of all codelists of a cohort with cohortCodelist() by @catalamarti in #770
• Export SQL and explain SQL can be added to the result object by @catalamarti in #765
• Create as_tibble() method for concept_set_expression by @catalamarti in #774
• newConceptSetExpression() accepts codelists as inputs by @catalamarti in #773
• exportConceptSetExpression() exports codelists as concept_set_expression by @catalamarti in #773

omopgenerics 1.3.1

• The time a query takes to compute is included in the log file by @edward-burn in #737
• Create emptyConceptSetExpression function by @edward-burn #735
• Empty codelist has class codelist by @edward-burn in #734
• Correct typo for condition_era_id by @catalamarti in #727
• Add … argument to insertTable by @catalamarti in #725
• observation_period and person are no longer required in the cdm object @catalamarti #746
• Create function omopDataFolder() for the management of OMOP related data @catalamarti #747
• Remove tictoc from suggests and use base R by @catalamarti #748
• Support end and start date for table payer_plan_period by @catalamarti #749
• validate cohortId in recordCohortAttrition by @catalamarti #750
• Add separate vignette for suppression by @catalamarti #751
• Depend on dbplyr 2.5.1 to be able to use the new translations of clock by @catalamarti #754
• Add methods to support local datasets by @catalamarti in #757
• Cast columns for local cdms by @catalamarti #758

omopgenerics 1.3.0

• Write method for summary.cdm_source by @catalamarti in #719 #720
• Add query id in logging files by @catalamarti in #716
• Expanding omopgenerics vignette by @catalamarti in #721
• Indexes experimental functions by @catalamarti in #722 #723 #724

omopgenerics 1.2.0

• Remove NA in estimates in transformToSummarisedResult by @catalamarti in #702
• Create logging functions by @catalamarti in #700
• Allow strata to be a character by @catalamarti in #703
• Remove settings that are NA after filterSettings by @catalamarti in #704
• validateWindowArgument force snake_case names by @catalamarti in #711
• Keep cohort_table class after collect by @catalamarti in #710
• dplyr::as_tibble for codelist by @catalamarti in #712
• type -> codelist_type by @catalamarti in #709

omopgenerics 1.1.1

• more general validation for cohorts by @edward-burn in #692
• change grepl to stringr::str_detect by @catalamarti in #689
• allow readr::guess_encoding to fail and default configuration by @catalamarti in #685
• keep codelist class when subsetting by @catalamarti in #693
• export summarised_results always as utf8 by @catalamarti in #690
• add option checkPermanentTable to validateCohortArgument by @catalamarti in #694

omopgenerics 1.1.0

• more general cdm validation checks by @edward-burn in #674
• typo in validateConceptSet by @catalamarti in #673
• fix call argument by @catalamarti in #677
• fix tempdir(“…”) by @catalamarti in #679
• new function transformToSummarisedResult by @catalamarti in #676

omopgenerics 1.0.0

• Stable release of the package.
• Added a NEWS.md file to track changes to the package.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.