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ordinalbayes

Installing ordinalbayes

1. Install JAGS https://mcmc-jags.sourceforge.io
2. Install R https://cran.r-project.org
3. Install runjags which is hosted on CRAN and http://runjags.sourceforge.net
4. Install Bioconductor packages

1. See https://www.bioconductor.org/install/ to install base Bioconductor packages
2. To run examples using finalSet and reducedSet the DESeq2 package is needed. To install run > BiocManager::install(“DESeq2”)

5. Install ordinalbayes using

1. within R use > install.packages(“ordinalbayes”) or

2. devtools::install_github(“kelliejarcher/ordinalbayes”, build_vignettes = TRUE) This latter command takes longer because the vignette needs to be built.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.