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otuSummary

R package of ‘otuSummary’

This package contains some functions which summarize the taxonomic composition, diversity at given taxonomic level, the contribution to beta diversity (Bray-Curtis dissimilarity) of the rare and abundant biospheres by using the OTU table which was generated either by qiime or mothur.

How to install this package from github?

if(!require(devtools)){
  install.packages("devtools")
  library(devtools)
} else {library(devtools)
}

install_github("cam315/otuSummary")

Check function list

library("otuSummary")
lsf.str("package:otuSummary")

About citation

citation("otuSummary")

Comments or suggestions

If you have any comments or suggestions, please do not be hesitate to post on my github or drop email to me.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.