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This package implements the functions neeeded to perform
PACo (Balbuena et al. 2013) in R.
Balbuena, Juan Antonio, Raúl Míguez-Lozano, and Isabel Blasco-Costa. “PACo: A Novel Procrustes Application to Cophylogenetic Analysis.” PLoS ONE 8, no. 4 (2013): e61048. doi:10.1371/journal.pone.0061048.
Have a look at the manual, ?PACo has a full example.
Note that the paco_links function returns the bias-corrected jackknife
estimates of each interaction’s residual rather than the mean and
confidence intervals of jackknife runs.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.