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paleoDiv 0.4.0
- added three additional functions of general utility: violins() is a
wrapper around viol() facilitating its use for general-purpose violin
plots, jitterp() plots a simple jitter plot, and multijitter() is a
wrapper around jitterp() analogous to violins() around viol(). These
offer an advantage over ggplot2:geom_violin() and ggplot2::geom_jitter()
when integration with base R graphics is needed or desired.
paleoDiv 0.3.5
- changed handling of plot limits by phylo.spindles() to make use of
the full available plotting space of the active device for the
horizontal extent of plotted spindles
paleoDiv 0.3.4
- added parameters for setting the country/continent and environment
type when downloading pdb data
paleoDiv 0.3.3
- added ylimits parameter to phylo.spindles() to specify vertical plot
size is no phylogeny is plotted
paleoDiv 0.3.2
- patched label placement issue in phylo.spindles() when
txt.x==NULL
paleoDiv 0.3.1 (Release
date: 2024-05-03)
- patch for bug in tree.age.combine() (issue with underscores in taxon
names, now automatically removed)
paleoDiv 0.3.0 (Release
date: 2024-05-02)
- added two new functions, tree.ages.spp() and tree.age.combine() to
facilitate building matrices for time calibration of phylogenies
paleoDiv 0.2.6 (Release
date: 2024-04-05)
- improved automatic dimension settings for ts.periods() and
ts.stages()
paleoDiv 0.2.5 (Release
date: 2024-03-24)
- added parameter ‘italicize’ to phylo.spindles, allowing automatic
italicization of taxa given as indices or taxon names
- improved color vector handling by phylo.spindles (colour vectors
that are too short or long are now cycled or abridged
automatically)
paleoDiv 0.2.4 (Release
date: 2024-03-23)
- added better customizability for phylo.spindles Two new parameters
for controlling y locations for plotting and text x alignment
- standard value 0 for pos parameter of viol
- fixed bug in setting of cutoff values if no ages are provided
- fixed abdistr_() function; previous version erraneously failed to
take into account the ab.val data in the calculation of abundance
because of a forgotten # sign
- improved handling of spindle limits in phylo.spindles (cutoff
variable) if no age data are provided
# paleoDiv 0.2.3
(Release date: 2024-03-08)
# paleoDiv 0.2.2
(Release date: 2024-03-07)
- Fixed behaviour when paleobioDB is unavailable; all datasets for
examples and vignette are now included in package data, so this code
should run error-free even if website is unavailable.
# paleoDiv 0.2.1
(Release date: 2024-03-06)
- changed row numbering of output of synonymize()
# paleoDiv 0.2.0
(Release date: 2024-03-05)
- changed description and documentation
- fixed message output
- improved behavior of phylo.spindles; now allows plotting without any
phylogeny
# paleoDiv 0.1.1
(Release date: 2024-03-02)
- improvement to tree.ages() (if data is not found) and added option
for occ.cleanup() to return whole data.frame instead of mere
collumn
# paleoDiv v0.1.0
(Release date: 2024-03-01)
- Additional function synonymize() that helps with manual editing of
taxon-range tables to remove taxonomic errors
# paleoDiv v0.0.7
(Release date: 2024-03-01)
- Improved error-handling behaviour of pdb() function and others based
on it
# paleoDiv v0.0.6
(Release date: 2024-03-01)
- txt.y argument of phylo.spindles() now accepts vectorized input
# paleoDiv v0.0.5
(Release date: 2024-02-29)
- First version of this package
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.