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pathfindR.data 2.1.0

Major changes

• Updated hsa KEGG pathways gene set objects kegg_genes and kegg_descriptions
• Updated mmu KEGG pathways gene set objects mmu_kegg_genes and mmu_kegg_descriptions
• Updated Reactome gene set objects reactome_genes and reactome_descriptions
• Updated BioCarta gene set objects biocarta_genes and biocarta_descriptions
• Updated GO gene set objects go_all_genes and GO_all_terms_df
• Updated the BioGRID PIN adjacency list biogrid_adj_list
• Updated the KEGG adjacency list kegg_adj_list
• Updated the STRING adjacency lists mmu_string_adj_list and string_adj_list
• Updated the example data: example_custom_genesets_result, example_pathfindR_output, example_pathfindR_output_clustered, example_comparison_output and example_mmu_output
• Updated the example_active_snws data
• updated the manifest data frame pathfindR.data_updates

pathfindR.data 2.0.0

Major changes

• Renamed example input/output data for better organization and easier access

pathfindR.data 1.1.3

Major changes

• Updated (hsa) KEGG pathways gene set objects kegg_genes and kegg_descriptions
• Updated mmu KEGG pathways gene set objects mmu_kegg_genes and mmu_kegg_descriptions
• Updated Reactome gene set objects reactome_genes and reactome_descriptions
• Updated BioCarta gene set objects biocarta_genes and biocarta_descriptions
• Updated GO gene set objects go_all_genes and GO_all_terms_df
• Updated the BioGRID PIN adjacency list biogrid_adj_list
• Updated the KEGG adjacency list kegg_adj_list
• Updated the IntAct PIN adjacency list intact_adj_list
• Updated the example data: RA_output, RA_clustered, RA_comparison_output and myeloma_output

pathfindR.data 1.1.2

Major changes

• Updated (hsa) KEGG pathways gene set objects kegg_genes and kegg_descriptions
• Updated mmu KEGG pathways gene set objects mmu_kegg_genes and mmu_kegg_descriptions
• Updated Reactome gene set objects reactome_genes and reactome_descriptions
• Updated BioCarta gene set objects biocarta_genes and biocarta_descriptions
• Updated GO gene set objects go_all_genes and GO_all_terms_df
• Updated example data RA_output, RA_clustered, RA_comparison_output and myeloma_output
• Updated the BioGRID PIN adjacency list biogrid_adj_list
• Updated the STRING PIN adjacency list string_adj_list
• Updated the mmu STRING PIN adjacency list mmu_string_adj_list
• Updated the GeneMania PIN adjacency list genemania_adj_list
• Updated the KEGG adjacency list kegg_adj_list
• Updated the IntAct PIN adjacency list intact_adj_list
• Updated example custom enrichment results data frame custom_results

Minor changes and bug fixes

• Updated kegg_genes and kegg_descriptions so that there are no duplicated term descriptions
• Updated mmu_kegg_genes and mmu_kegg_descriptions so that there are no duplicated term descriptions

pathfindR.data 1.1.1

Major changes

• Added the data frame of data pathfindR.data_updates, containing all the data for pathfindR along with descriptions and last update dates
• Updated example data RA_output, RA_clustered, RA_comparison_output and myeloma_output after addition of the ‘support’ column

Minor changes and bug fixes

• Updated BioGRID PIN so that it does not contain self-interactions

pathfindR.data 1.1.0

Major changes

• Updated (hsa) KEGG pathways gene set objects kegg_genes and kegg_descriptions
• Updated mmu KEGG pathways gene set objects mmu_kegg_genes and mmu_kegg_descriptions
• Updated Reactome gene set objects reactome_genes and reactome_descriptions
• Updated BioCarta gene set objects biocarta_genes and biocarta_descriptions
• Updated GO gene set objects go_all_genes and GO_all_terms_df
• Updated Human Cell Markers gene set objects cell_markers_gsets and cell_markers_descriptions
• Updated the BioGRID PIN adjacency list biogrid_adj_list
• Updated the IntAct PIN adjacency list intact_adj_list
• Updated the KEGG adjacency list kegg_adj_list
• Updated example data RA_output, RA_clustered, RA_comparison_output and myeloma_output

pathfindR.data 1.0.0

Major changes

• Moved all data and related documentation from the main package pathfindR to this package

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.