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photosynthesis

Model C3 Photosynthesis

Description

photosynthesis is an R package with modeling tools for C3 photosynthesis, as well as analytical tools for curve-fitting plant ecophysiology responses. It uses the R package units to ensure that parameters are properly specified and transformed before calculations.

Get photosynthesis

From CRAN

install.packages("photosynthesis")

or from GitHub

install.packages("remotes")
remotes::install_github("cdmuir/photosynthesis")

And load photosynthesis

library("photosynthesis")

Vignettes

See the following vignettes for examples of what photosynthesis can do:

• Introduction to the photosynthesis package
• Modeling C3 Photosynthesis: recommendations for common scenarios
• Fitting light response curves
• Fitting CO2 response curves
• Fitting temperature response curves
• Fitting stomatal conductance models
• Fitting light respiration
• Fitting mesophyll conductance
• Fitting pressure-volume curves
• Fitting hydraulic vulnerability curves
• Sensitivity Analysis

Contributors

• Joseph Stinziano
• Chris Muir
• Cassaundra Roback
• Demi Sargent
• Bridget Murphy
• Patrick Hudson

Comments and contributions

We welcome comments, criticisms, and especially contributions! GitHub issues are the preferred way to report bugs, ask questions, or request new features. You can submit issues here:

https://github.com/cdmuir/photosynthesis/issues

Meta

• Please report any issues or bugs.
• License: MIT
• Get citation information for photosynthesis in R doing citation(package = 'photosynthesis')
• Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.