The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
Use phylocanvas to draw phylogenetic trees. Basic options to control the tree are availalbe in this top level function. The tree shape in controlled by the treetype option. Try ‘radial’ and ‘heirarchical’ as well.
library(magrittr)
library(phylocanvas)
tree = ape::read.tree(text = "(A:0.1,B:0.2,(C:0.3,D:0.4)E:0.5)F;")
phycanv <- phylocanvas(tree, treetype = "rectangular", alignlabels = T)phycircle <- phylocanvas(tree, treetype = "circular", nodesize = 30, linewidth = 10)
phycircleNode styling options are available. Most of the appearance of a node can be changed here. Note below that colors can be either colornames, rgb strings or hex strings.
# Note that colors are names, rgbs or hex
phycanv %>%
style_node("A", nodesizeratio = 4, fillcolor="rgb(0, 255, 0)") %>%
style_node("B", fillcolor = "blue") %>%
style_node("C", labeltextsize = 10, shape="triangle") %>%
style_node("D", fillcolor="#ffa500", highlighted=TRUE) phycircle %>% collapse_branch("E")phycircle %>% rotate_branch("E")phycanv %>% select_branch("B")phycanv %>% select_branch("E", cascade=TRUE)phycanv %>% highlight_node("B")Phylocanvas has a nubmer of different plugins that extend the basic tree. These include pluings ofr metadata, scale bars, svg export, context menu on the mouse, and history. We will try to add as many as reasonable. Currently this htmlwidget sis based on the phylocanvas-quickstart so we can activate the history, context, scale, and metadata features.
# Note the scalebar is active
tree = ape::read.tree(text="(A:0.1,B:0.2,(C:0.3,D:0.4)E:0.5)F;")
phylocanvas(tree, showscalebar = TRUE)These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.