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For methodological details regarding phylogenetic structural equation models, please see Thorson et al. (2023). When using the R-package phylosem, and for a comparison of it and other phylogenetic comparative methods software, please see Thorson and van der Bijl (2023). For methodological details regarding phylogenetic structural equation models, please see Thorson et al. (2023). When using the R-package phylosem, and for a comparison of it and other phylogenetic comparative methods software, please see Thorson and van der Bijl (2023).

Thorson JT, Maureaud AA, Frelat R, Mérigot B, Bigman JS, Friedman ST, Palomares MLD, Pinsky ML, Price SA, Wainwright P (2023). “Identifying direct and indirect associations among traits by merging phylogenetic comparative methods and structural equation models.” Methods in Ecology and Evolution, 14(5), 1259–1275. doi:10.1111/2041-210X.14076, https://doi.org/10.1111/2041-210X.14076.

Thorson JT, van der Bijl &W (2023). “phylosem: A fast and simple R package for phylogenetic inference and trait imputation using phylogenetic structural equation models.” Journal of Evolutionary Biology, 36(10), 1357-1364. doi:10.1111/jeb.14234, https://doi.org/10.1111/jeb.14234.

Corresponding BibTeX entries:

  @Article{,
    title = {Identifying direct and indirect associations among traits
      by merging phylogenetic comparative methods and structural
      equation models},
    journal = {Methods in Ecology and Evolution},
    volume = {14},
    number = {5},
    pages = {1259–1275},
    year = {2023},
    doi = {10.1111/2041-210X.14076},
    url = {https://doi.org/10.1111/2041-210X.14076},
    author = {J. T. Thorson and A. A. Maureaud and R. Frelat and B.
      Mérigot and J. S. Bigman and S. T. Friedman and M. L. D.
      Palomares and M. L. Pinsky and S. A. Price and P. Wainwright},
  }
  @Article{,
    title = {phylosem: A fast and simple R package for phylogenetic
      inference and trait imputation using phylogenetic structural
      equation models},
    journal = {Journal of Evolutionary Biology},
    volume = {36},
    number = {10},
    pages = {1357-1364},
    year = {2023},
    doi = {10.1111/jeb.14234},
    url = {https://doi.org/10.1111/jeb.14234},
    author = {James T. Thorson and & Wouter {van der Bijl}},
  }

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.