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phylosem 1.1.4

• removing checkDepPackageVersion(dep_pkg="Matrix", this_pkg="TMB") from .onLoad() as requested by K. Kristensen

phylosem 1.1.3

• Removing fit_tmb to simplify code and remove unnecessary warnings
• Adding codecov and extra tests
• Fixing R-CMD-check to force build Matrix/TMB from source

phylosem 1.1.2

• Adding new functions to provide warning if Matrix version doesn’t match what’s expected by TMB

phylosem 1.1.1

• Re-adding phylosignal as SUGGESTS
• Re-adding phylosignal to Fisheries vignette
• adding arguemnt what to as_phylo4d to allow easy extraction of standard errors

phylosem 1.1.0

• Adding new S3 generic functions: logLik and vcov
• Adding vignette “fisheries” associated with paper “Trees for fishes: The neglected role for phylogenetic comparative methods in fisheries science” accepted at Fish and Fisheries

phylosem 1.0.2

• Fixed bug arising when data are missing for observations in the earliest tips and for the first inputted variable
• Updating vignette to show confidence intervals on alpha/kappa/lambda as well as lnalppha/lnkappa/logitlambda

phylosem 1.0.1

• Address request from CRAN to use Suggests packages conditionally in examples
• Continuing to use Suggests packages unconditionally in vignettes based on Wickham guidance online

phylosem 1.0.0

• Attempting to fix warnings

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.