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pmparser 1.0.20

• Updated readme table in test standards.

pmparser 1.0.19

• Updated test standards based on the annual update to PubMed XML files.

pmparser 1.0.18

• Fixed parsing of CitedMedium within Journal.

pmparser 1.0.17

• Updated parsing of empty investigator fields.

pmparser 1.0.16

• Updated readme table in test standards.

pmparser 1.0.15

• Changed ftp URLs to https.
• Updated test standards based on new PubMed XML files.

pmparser 1.0.14

• Added columns for language and vernacular_title to the article table.

pmparser 1.0.13

• Added tables from the OtherAbstract and OtherID sections.

pmparser 1.0.12

• Fixed issues found by lintr.

pmparser 1.0.11

• Updated test standards based on PubMed’s updated README.txt.

pmparser 1.0.10

• Added import for curl::curl() to circumvent check NOTE.

pmparser 1.0.9

• Clarified error message when downloading PubMed files.
• Skip testing of file downloads on CRAN.

pmparser 1.0.8

• Increased timeout for downloading citation file.
• Reordered steps to check citation table even if other tables are up-to-date.
• Update to match lab style standard.

pmparser 1.0.7

• Explicitly added curl to Imports, since it’s used by utils::download.file().
• Set “HUGE” option for xml2::read_xml() to avoid occasional error.

pmparser 1.0.6

• Updated styling based on linter.

pmparser 1.0.5

• Added abstract_pos column to abstract table.
• If pub_year in journal table is empty, now extracts pub_year from medline_date.

pmparser 1.0.4

• Updated test standards for latest PubMed XML files.
• Returned to doParallel in scripts for simplicity.

pmparser 1.0.3

• Simplified xml2 dependency, since new version is now on CRAN.

pmparser 1.0.2

• Fixed windows compatibility.

pmparser 1.0.1

• Revised code to not need globalVariables() in order to pass R CMD check without notes.

pmparser 1.0.0

• Updated tests.

pmparser 0.0.0.9036

• Added data dictionary as a vignette and a table in the database.

pmparser 0.0.0.9035

• Remove rare, obnoxious unicode character from keyword name.

pmparser 0.0.0.9034

• Explicitly set doFuture chunking for all dopar loops.

pmparser 0.0.0.9033

• Suppress irrelevant warnings from future.

pmparser 0.0.0.9032

• %dopar% loops in other places now work with doFuture.

pmparser 0.0.0.9031

• %dopar% loops in getPubmedFiles() now work with doFuture.
• Use updated version of withr on CRAN.

pmparser 0.0.0.9030

• Renamed internal functions for consistency and clarity.

pmparser 0.0.0.9029

• getCitation() now uses data.table::fread() to write table in chunks, ~3.3x faster.
• Switched from dbAppendTable() to dbWriteTable(..., append = TRUE) for inexplicable speed increase.

pmparser 0.0.0.9028

• getCitation() now uses vroom for arkdb::unark().
• Moved DBI driver packages to Suggests to reduce dependencies.

pmparser 0.0.0.9027

• Removed obsolete copyright column from the abstract table.

pmparser 0.0.0.9026

• parseMesh() now returns an additional table containing the IndexingMethod attribute.

pmparser 0.0.0.9025

• Fixed rare case of a parsing function returning a data.table with NA in columns instead of a data.table with no rows.

pmparser 0.0.0.9024

• Switched to using glue under the hood.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.