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poissonreg

R-CMD-check CRAN status Codecov test coverage Lifecycle: experimental

poissonreg enables the parsnip package to fit various types of Poisson regression models including ordinary generalized linear models, simple Bayesian models (via rstanarm), and two zero-inflated Poisson models (via pscl).

Installation

You can install the released version of poissonreg from CRAN with:

install.packages("poissonreg")

Install the development version from GitHub with:

require("devtools")
install_github("tidymodels/poissonreg")

Available Engines

The poissonreg package provides engines for the models in the following table.

model engine mode
poisson_reg glm regression
poisson_reg hurdle regression
poisson_reg zeroinfl regression
poisson_reg glmnet regression
poisson_reg stan regression

Example

A log-linear model for categorical data analysis:

library(poissonreg)

# 3D contingency table from Agresti (2007): 
poisson_reg() %>% 
  set_engine("glm") %>% 
  fit(count ~ (.)^2, data = seniors)
#> parsnip model object
#> 
#> 
#> Call:  stats::glm(formula = count ~ (.)^2, family = stats::poisson, 
#>     data = data)
#> 
#> Coefficients:
#>               (Intercept)               marijuanayes  
#>                    5.6334                    -5.3090  
#>              cigaretteyes                 alcoholyes  
#>                   -1.8867                     0.4877  
#> marijuanayes:cigaretteyes    marijuanayes:alcoholyes  
#>                    2.8479                     2.9860  
#>   cigaretteyes:alcoholyes  
#>                    2.0545  
#> 
#> Degrees of Freedom: 7 Total (i.e. Null);  1 Residual
#> Null Deviance:       2851 
#> Residual Deviance: 0.374     AIC: 63.42

Contributing

This project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.