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Version 1.1 is published in Molecular Ecology Resources:

Clark L, Jasieniuk M (2011). “polysat: an R package for polyploid microsatellite analysis.” Molecular Ecology Resources, 11(3), 562–566. doi:10.1111/j.1755-0998.2011.02985.x.

New functions available in versions 1.4 through 1.6, for splitting loci into isoloci, are described in:

Clark L, Drauch Schreier A (2017). “Resolving microsatellite genotype ambiguity in populations of allopolyploid and diploidized autopolyploid organisms using negative correlations between allelic variables.” Molecular Ecology Resources, 17(5), 1090-1103. doi:10.1111/1755-0998.12639.

Corresponding BibTeX entries:

  @Article{,
    title = {polysat: an R package for polyploid microsatellite
      analysis},
    author = {Lindsay V. Clark and Marie Jasieniuk},
    journal = {Molecular Ecology Resources},
    year = {2011},
    volume = {11},
    pages = {562--566},
    number = {3},
    doi = {10.1111/j.1755-0998.2011.02985.x},
  }
  @Article{,
    title = {Resolving microsatellite genotype ambiguity in populations
      of allopolyploid and diploidized autopolyploid organisms using
      negative correlations between allelic variables},
    author = {Lindsay V. Clark and Andrea {Drauch Schreier}},
    year = {2017},
    volume = {17},
    pages = {1090-1103},
    number = {5},
    journal = {Molecular Ecology Resources},
    doi = {10.1111/1755-0998.12639},
  }

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.