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Package Overview

pooledpeaks is designed for analyzing genetic data obtained from Fragment Analysis output files (.fsa) of pooled biological samples. It provides functions for a comprehensive analysis pipeline from processing .fsa files, to cleaning the peak data, and conducting population genetic analyses. Some features are listed below and a usage example of the entire pipeline is included as a vignette.

Features

The pooledpeaks package was developed by the Blanton Lab as part of Kathleen Kuesters’ dissertation.

Installation Instructions

You can install the package directly from GitHub using the following instructions:

Open R and copy the following code into your console

Install devtools and pooledpeaks from GitHub

Install pooledpeaks directly from CRAN

References:

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.