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qsub 1.1.3

• BUG FIX: Fix compress parameter such that it should contain only one value at a time.

qsub 1.1.2

• BUG FIX: Copy paste the relevant code from tools::R_user_dir() into config_file_location() to ensure that qsub works with older versions of R.

• TESTING: Skip test on CRAN which might result in the creation of the cache dir as specified by R_user_dir if it did not already exist.

qsub 1.1.1

• BUG FIX: Surround readRDS() with tryCatch() such that if there is an rds object but it is truncated, qsub handles this as if there was no file at all.

• MINOR CHANGE: config_file_location() now uses tools::R_user_dir() to determine the path of the config file.

qsub 1.1.0 (13-02-2019)

• MINOR CHANGE: There is now an option to compress the output files, which is turned on by default.

• MINOR CHANGE: Allow unix systems to use rsync instead of cp for fetching the qsub output.

• BUG FIX: Fix qsub_retrieve() when processing the output; it did not take into account that batch_tasks could not be equal to 1.

• MINOR CHANGE: qsub_retrieve() now uses pbapply when loading in the output.

• BUG FIX: Test ssh connection pointer before using it.

• BUG FIX: Do not remove the first line of an error file.

• MINOR CHANGE: Use absolute paths to output standard output and error logs (#16, suggested by @mmehan).

• MINOR CHANGE; Allow rsync to also use the username@host:port notation (#16, suggested by @mmehan).

qsub 1.0.0 (30-07-2018)

• INITIAL RELEASE: qsub allows you to run lapply() calls in parallel by submitting them to gridengine clusters using the qsub command.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.