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Please cite the following publication if the quaqcr package has been useful for your research.

Tremblay B, Qüesta J (2024). “quaqc: efficient and quick ATAC-seq quality control and filtering.” Bioinformatics, 40(11), btae649. doi:10.1093/bioinformatics/btae649. https://doi.org/10.1093/bioinformatics/btae649.

Corresponding BibTeX entry: 

  @Article{,
    title = {quaqc: efficient and quick ATAC-seq quality control and
      filtering},
    author = {Benjamin JM Tremblay and Julia I Qüesta},
    journal = {Bioinformatics},
    year = {2024},
    volume = {40},
    number = {11},
    pages = {btae649},
    url = {https://doi.org/10.1093/bioinformatics/btae649},
    doi = {10.1093/bioinformatics/btae649},
  }

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.