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calculate_metrics which will
make calls to the “calculate” family of quicR functions, and return a
dataframe of all the metrics passed to the function.plot_metrics function which accepts the
output of the calculate_metrics function and returns a
faceted plot of the calculated metrics.get_meta so that the second
column doesn’t have a leading white space.get_wells. This wasn’t
necessarily a bug, but was not ideal and the messages didn’t provide any
relevant information about what the function was doing.get_wells which caused the function to
assigning a data frame as a variable instead of returning the data
frame.calculate_threshold function for
calculating detection thresholds using a common method done in the
literature.sep argument to
get_sample_locations for delimiting sample IDs and dilution
factors.calculate_MS function to a vectorized
function, and instead of using lm, the function looks at
differences within the moving window. This provides a much faster
calculation, but does reduce the accuracy slightly. May provide the
option to do either methods in the future.tab_name in
the get_sample_locations function.Added a new function “transpose_real.R” which takes the output of “get_real.R” and transposes it. This format makes it such that each read is a column labelled with the time of the read.
Removed the transposition sub-function from “normalize_RFU.R” to be its own separate function.
Updated example scripts to incorporate the new transposition function.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.