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To cite in publications use:
Matzke N, Sidje R, Schmidt D (2023). rexpokit v0.26.6.13: R wrappers for EXPOKIT; other matrix functions. School of Biological Sciences, University of Auckland, New Zealand.
NOTE 1: Additional URLs: https://zenodo.org/badge/latestdoi/17001945 , http://dx.doi.org/10.5281/zenodo.1442889 , https://cran.r-project.org/package=rexpokit , http://phylo.wikidot.com/rexpokit.
NOTE 2: The EXPOKIT FORTRAN library was published in: Sidje, R.B. (1998). A Software Package for Computing Matrix Exponentials. ACM-Transactions on Mathematical Software, 24(1):130-156. http://tinyurl.com/bwa87rq ;
Also, the rexpokit R package was first published in: Matzke, Nicholas J. (2013). Probabilistic historical biogeography: new models for founder-event speciation, imperfect detection, and fossils allow improved accuracy and model-testing. Frontiers of Biogeography, 5(4), 242-248. http://escholarship.org/uc/item/44j7n141
A lot of time and effort in creating EXPOKIT and rexpokit, please cite it, Sidje (1998), and Matzke (2013) when using it for publication. See also ‘citation("pkgname")’ for citing R packages.
Corresponding BibTeX entry:
@Manual{, title = {rexpokit v0.26.6.13: R wrappers for EXPOKIT; other matrix functions}, author = {Nicholas J. Matzke and Roger B. Sidje and Drew Schmidt}, organization = {School of Biological Sciences, University of Auckland}, address = {New Zealand}, year = {2023}, note = { NOTE 1: Additional URLs: https://zenodo.org/badge/latestdoi/17001945 , http://dx.doi.org/10.5281/zenodo.1442889 , https://cran.r-project.org/package=rexpokit , http://phylo.wikidot.com/rexpokit. NOTE 2: The EXPOKIT FORTRAN library was published in: Sidje, R.B. (1998). A Software Package for Computing Matrix Exponentials. ACM-Transactions on Mathematical Software, 24(1):130-156. http://tinyurl.com/bwa87rq ; Also, the rexpokit R package was first published in: Matzke, Nicholas J. (2013). Probabilistic historical biogeography: new models for founder-event speciation, imperfect detection, and fossils allow improved accuracy and model-testing. Frontiers of Biogeography, 5(4), 242-248. http://escholarship.org/uc/item/44j7n141 }, url = {http://phylo.wikidot.com/rexpokit}, }
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.