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ribd: Pedigree-based Relatedness Coefficients

Recursive algorithms for computing various relatedness coefficients, including pairwise kinship, kappa and identity coefficients. Both autosomal and X-linked coefficients are computed. Founders are allowed to be inbred, which enables construction of any given kappa coefficients, as described in Vigeland (2020) <doi:10.1007/s00285-020-01505-x>. In addition to the standard coefficients, 'ribd' also computes a range of lesser-known coefficients, including generalised kinship coefficients, multi-person coefficients and two-locus coefficients (Vigeland, 2023, <doi:10.1093/g3journal/jkac326>). Many features of 'ribd' are available through the online app 'QuickPed' at <https://magnusdv.shinyapps.io/quickped>; see Vigeland (2022) <doi:10.1186/s12859-022-04759-y>.

Version: 1.7.0
Depends: pedtools (≥ 2.2.0), R (≥ 4.1.0)
Imports: glue, kinship2, slam
Suggests: ggplot2, ggrepel, plotly, spelling, testthat
Published: 2024-03-26
DOI: 10.32614/CRAN.package.ribd
Author: Magnus Dehli Vigeland ORCID iD [aut, cre]
Maintainer: Magnus Dehli Vigeland <m.d.vigeland at medisin.uio.no>
License: GPL-3
URL: https://github.com/magnusdv/ribd, https://magnusdv.github.io/pedsuite/
NeedsCompilation: no
Language: en-GB
Citation: ribd citation info
Materials: README NEWS
CRAN checks: ribd results

Documentation:

Reference manual: ribd.pdf

Downloads:

Package source: ribd_1.7.0.tar.gz
Windows binaries: r-devel: ribd_1.7.0.zip, r-release: ribd_1.7.0.zip, r-oldrel: ribd_1.7.0.zip
macOS binaries: r-release (arm64): ribd_1.7.0.tgz, r-oldrel (arm64): ribd_1.7.0.tgz, r-release (x86_64): ribd_1.7.0.tgz, r-oldrel (x86_64): ribd_1.7.0.tgz
Old sources: ribd archive

Reverse dependencies:

Reverse depends: pedsuite
Reverse imports: dvir, forrel, ibdsim2, KinMixLite, numberofalleles, pedbuildr, verbalisr

Linking:

Please use the canonical form https://CRAN.R-project.org/package=ribd to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.