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ribiosPlot 1.3.0

• Initial CRAN submission
• Package prepared for CRAN submission with comprehensive documentation
• Depends on ribiosUtils (on CRAN)
• Optional Vennerable integration for users who install it separately

ribiosPlot 1.1.30 (2015-08-04)

• Add royalredgrayblue and royalbluegrayred color palettes
• plotPCA: xlim/ylim parameters auto-adjust for text labels
• Add function getLims to get xlim/ylim values from vectors

ribiosPlot 1.1.29 (2015-03-13)

• compactPar more flexible to accept and pass parameters to par

ribiosPlot 1.1.28 (2015-02-03)

• Fix bug in heat function: return (n)

ribiosPlot 1.1.26 (2015-01-06)

• Add compactTrellis() and setCompactTrellis() for compact publication figures
• Add function p2asterisk to map p values to asterisk symbols
• Use roxygen2 for documentation

ribiosPlot 1.1.25 (2014-07-30)

• Add function fcbrewer for factor-matching colors
• Improved manual pages
• Rename sqlayout to squareLayout
• Rename compPar to compactPar

ribiosPlot 1.1.24 (2014-07-01)

• biosHeatmap: cex main size better guessed

ribiosPlot 1.1.23 (2014-04-28)

• Add intRange and squareLayout
• pdf2png works on UDIS machine

ribiosPlot 1.1.22 (2014-04-22)

• Add histMat to visualize matrices with histograms
• Add plotPCA

ribiosPlot 1.1.20 (2014-01-28)

• Add qHist and xclipHist histogram functions

ribiosPlot 1.1.19 (2014-01-23)

• Add ribiosUtils to dependency list

ribiosPlot 1.1.18 (2014-01-22)

• Add pdf2png to convert PDF to PNG

ribiosPlot 1.1.17 (2013-08-19)

• Add cyanblackyellow and yellowblackyan color combinations
• Add jitter.xyplot

ribiosPlot 1.1.16 (2013-07-22)

• brewer.pal.factor auto-adjusts color palette size
• PCA plotting functions refactored

ribiosPlot 1.1.15 (2013-02-22)

• Update boxplot.Rscript with improved features

ribiosPlot 1.1.14 (2012-10-20)

• Add idev and ipdf functions for plotting in Rscripts
• Add blackyellowred and blackgoldred color panels

ribiosPlot 1.1.13 (2012-09-11)

• exprs-boxplot.Rscript: accepts tab-delimited and gct files

ribiosPlot 1.1.12 (2012-09-10)

• exprs-boxplot.Rscript works with GCT files

ribiosPlot 1.1.11 (2012-08-22)

• Bug fix: boundNorm works with NAs

ribiosPlot 1.1.10 (2012-06-07)

• Fix typos in brewer.pal.factor and brewer.pal.factorLevels

ribiosPlot 1.1.9 (2012-06-06)

• exprs-boxplot.Rscript: handle user-specified ylim values

ribiosPlot 1.1.8 (2012-05-23)

• Distance function changed from dist to robustDist
• Add documentation for color functions
• Substantially updated biosHeatmap documentation

ribiosPlot 1.1.7 (2012-04-30)

• coverage-plot.Rscript feature file improvements

ribiosPlot 1.1.6 (2012-04-15)

• Add exprs-boxplot.Rscript for command line boxplots

ribiosPlot 1.1.5 (2012-04-02)

• coverage-plot.Rscript supports sequence annotation

ribiosPlot 1.1.4 (2012-03-19)

• Add -featurefile option to coverage-plot.Rscript
• Fix partial matching bug in biosHeatmap

ribiosPlot 1.1.3 (2012-03-09)

• Add coverage-plot.Rscript

ribiosPlot 1.1.2 (2012-02-14)

• biosHeatmap.Rscript uses Ward as default clustering method

ribiosPlot 1.1.1 (2011-12-08)

• geneset_xyplot.Rscript improvements

ribiosPlot 1.1.0 (2011-12-02)

• Add whiteblueblackheat to three-color palettes

ribiosPlot 1.0.9 (2011-11-23)

• Add whiteblack and blackwhite to two-color palettes

ribiosPlot 1.0.8 (2011-11-22)

• Add guessWH function for auto width/height ratio of heatmaps
• Margins automatically determined based on xlab/ylab

ribiosPlot 1.0.7 (2011-11-17)

• biosHeatmap.Rscript: lwids and lheis options obsolete

ribiosPlot 1.0.6 (2011-11-16)

• Data import taken over by ribiosIO::read_exprs_matrix
• Long titles wrapped in biosHeatmap

ribiosPlot 1.0.5 (2011-11-15)

• Add Rscript subdirectory for plotting scripts

ribiosPlot 1.0.4 (2011-11-10)

• Export colorpanel function

ribiosPlot 1.0.3 (2011-10-10)

• Add zlim option to biosHeatmap

ribiosPlot 1.0.2 (2011-10-05)

• Add turyeb color palette

ribiosPlot 1.0.1 (2011-10-04)

• Margins automatically guessed
• Fine tuning of heatmap key plot parameters

ribiosPlot 1.0.0 (2011-09-20)

• Initial release: refactor visualization functions from ribios package

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.