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reticulate is installed (for
noSuggests tests in CRAN).repository: ${{ github.repository }} –>
repository: ${{ env.packageName }}testthat function
skip_if_offline.rmarkdown::html_vignette instead of
BiocStyle::html_document.devtools::test_coverage() in
the terminal) #112rworkflows package versioning with
rworkflows action Release versioning.use_vignette_docker/use_vignette_getstarted
package arg if not provided.construct_cont, as not
everyone will have rworkfows installed on the machine where
the vignette is being rendered.\itemize –> describe to avoid
CRAN check errors.gha_python_versions() within
construct_runnersminiforge_variantminiforge_versionactivate_environmentenvironment_filechannelsconstruct_conda_ymlconstruct_conda_yml and building
conda envs from the generated yamls.fill_yaml
is_defaultforce=TRUE to the
remotes::install_local steps. #86runforesight/workflow-telemetry-action step.rspm explicitly by default.construct_cont:
default_registrycheck_registrydocker_registry arg to let users choose which
registry to push to. Defaults to “ghcr.io” instead of “docker.io” so
that no additional credentials are needed.
use_workflowget_github_url_desc
free_diskspace
use_workflowuse_workflow
template arg can now be “rworkflows_static:dev” to use
the “dev” branch’s version of action.yml as a workflow
template.use_vignette_docker
infer_docker_orgno visible global function definition for internal function check_miniconda_args
check_miniconda_args was clearly defined in its
own file. The only way to fix it was copying the function into the same
one where it was called fill_yaml.echo "GITHUB_TOKEN=${{ inputs.GITHUB_TOKEN }}" >> $GITHUB_ENVrunforesight/workflow-telemetry-action step and
move to top.infer_deps
infer_deps the DESCRIPTION path directly
within the fill_description func.conda_*
setup-miniconda.use_codespace
run_vignettes.tinytex_installer,
tinytex_version, pandoc_versiontinytex R package.construct_runners
bioc is of length one, the same value
is automatically applied across all 3 OS.use_workflow
name arg into two args: name +
template, so that you can create multiple separate workflow
files using the same template.tinytex_installer,
tinytex_version, pandoc_versionsave_yamlcheck_bioc_versioncheck_r_versionconstruct_contBiocPkgTools + biocViews to
Suggests
fill_yaml
omit_if_default to omit tinytex args
from yaml.is_rstudio: new interal helper function.github_token parameter docs between
action.yml and use_workflow.BiocPkgTools/biocViews to
Suggests to compensate for issues with the CRAN server: #65fill_yaml:
template="rworkflows_static", prevent
with2 from simplifying to vector.construct_runners
rspm wasn’t getting added.get_github_url_db
docs size by rendering PNG instead of html in
depgraph vignette.get_hex and get_description
get_description
use_repos arg.@returns in
Roxygen notes.action.yml
repos
before it was defined.bibentry for CITATION.To compensate for this had to modify
test-bioc_r_versions.
use_workflow
branch to align
with Bioc’s
recent changes to their standards.get_description unit tests.construct_authors unit tests.infer_biocviews tests.codecov_graphs: Fix link with redirect.timeout arg to R package installation steps
too.AnVIL usage, as the URLs are now
deprecated and BiocManager uses the pre-compiled binaries
by default.get_description
description obj directly to any argument
returns that obj.refs at onceget_hex
output style arg to vignette functions.use_vignette_docker
port_in and port_outport_out=8900 to align with the available
Imperial Private Cloud ports (8900-9000).fill_descriptioninfer_depsinfer_biocviewsis_ghaBiocCheck in rworkflow yamls.require() calls in action.yml
quiet.use_badges
add_codecov_graphscodecov_graphsbioc_r_version:
depth and internal func
parse_versionget_hex / use_badges
add_hex is a character string, interpret it as the
hex path instead.use_badges
add_lifecycle:
badger::badge_lifecycle()biocViews: WorkflowManagementget_hex: Remove extra breaksif statements when
rworkflows_static gets saved.is_default as it is never used. Document in gist
for later use:
https://gist.github.com/bschilder/f02a5b564977f52fd665728a22c0d005use_badges:
pkg arg for explicit package
specification.get_descriptionuse_badges:
ref and pkg explicitly in relevant
functions to avoid inference.r-lib/setup-r-dependenciesr-lib/setup-tinytexgrimbough/bioc-actions/setup-bioctimeoutr-lib/setup-r-dependencies
node_modules$package-lock\.json$package\.json$no-check-CRAN arg to BiocCheck step to
allow using bioc checks for packages already on CRAN.get_hex in cases where multiple links in
DESCRIPTION URL.use_issue_templatervestUpSetRgithubinstallBiocManagerbioc_r_versionsconstruct_runnersrcmdcheck \link with
\hrefuse_badges: remove unnecessary ref
arg.has_latex
use_workflowrworkflow action.add_badges
use_readmeuse_vignette_dockeruse_vignettte_getstarted|> was introduced.badger a Importvignette field in use_vignette_*
functions.run_crancheck –> run_rcmdcheckDOCKER_ORG –> docker_orgDOCKER_USERNAME –> docker_useras_cran: separate from run_rcmdchecktag: specify action version.use_workflow(run_docker=FALSE)repositorybadgeNEWS.md file to track changes to the
package.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.