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SCOPer (Spectral Clustering for clOne Partitioning) provides a computational framework for the identification of B cell clonal relationships from Adaptive Immune Receptor Repertoire sequencing (AIRR-Seq) data. It includes methods for assigning clonal identifiers using sequence identity, hierarchical clustering, and spectral clustering. SCOPer is part of the Immcantation analysis framework.
If you need help or have any questions, please contact the Immcantation Group.
If you have discovered a bug or have a feature request, you can open an issue using the issue tracker.
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.