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If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
To cite sctransform in publications, please use:
Hafemeister C, Satija R (2019). “Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression.” Genome Biology, 20, 296. doi:10.1186/s13059-019-1874-1, https://doi.org/10.1186/s13059-019-1874-1.
Choudhary S, Satija R (2022). “Comparison and evaluation of statistical error models for scRNA-seq.” Genome Biology, 23, 20. doi:10.1186/s13059-021-02584-9, https://doi.org/10.1186/s13059-021-02584-9.
Corresponding BibTeX entries:
@Article{,
author = {Christoph Hafemeister and Rahul Satija},
title = {Normalization and variance stabilization of single-cell
RNA-seq data using regularized negative binomial regression},
journal = {Genome Biology},
year = {2019},
volume = {20},
pages = {296},
doi = {10.1186/s13059-019-1874-1},
url = {https://doi.org/10.1186/s13059-019-1874-1},
}
@Article{,
author = {Saket Choudhary and Rahul Satija},
title = {Comparison and evaluation of statistical error models for
scRNA-seq},
journal = {Genome Biology},
year = {2022},
volume = {23},
pages = {20},
doi = {10.1186/s13059-021-02584-9},
url = {https://doi.org/10.1186/s13059-021-02584-9},
}
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.