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sedproxy 0.7.5

• depend on R >= 3.5.0
• remove tidyverse from suggests
• move Shiny code to new package https://github.com/EarthSystemDiagnostics/shinysedproxy
• wrap stat::time() in as.numeric() to speed up %in% comparison

sedproxy 0.7.4

• fix bug in ChunkMatrix where if a single timepoint is selected it would be off by one
• fix bug in BioturbationWeights to allow very small mixing depths with zero layer thickness
• fix bug in assigning points to the mixed layer when timepoint are not in increasing age order

sedproxy 0.7.3

• refactor and rename growth rate function to be more intuitive

sedproxy 0.7.2

• modifications to pass R CMD check
• depend on R >= 4.0.0

sedproxy 0.7.1

• set growth to zero at temperatures below -2°C in growth_rate_l09_R (FAME)

sedproxy 0.7.0

• feature - allow simulation of proxy in mixed layer

sedproxy 0.6.6

• bugfix - allow duplicated requested timepoints
• additionally include n.samples in output

sedproxy 0.6.5

• bugfix - fix case where bio.depth and layer width both == 0, single row of clim.signal should be used for each requested timepoint

sedproxy 0.6.4

• implement growth rate threshold in growth_rate_l09_R (FAME)

sedproxy 0.6.2

• fixed calibration parameters attribute

sedproxy 0.6.1

• Release version for final copy edited version of CoTP paper
• Repository moved to Github

sedproxy 0.6

• Fast version of ClimToProxyClim called internally when parameters are time-invariant
• Bugfix to calculation of bioturbation weights when layer.width == 0
• Other performance improvements
• Basic unit tests to detect changes to output for a standard simulation

sedproxy 0.5.0

• Release version for revised CoTP Discussion paper
• Can now use dynamic habitat weights
• Now has explicit sensor stage with conversion from temperature to Mg/Ca or Uk’37 units
• Habitat weights can be calculated using temperature response function and parameterisation from FAME 1.0 module
• Calibration uncertainty modelled via sampling parameters from fitted calibration regression model for each replicate

sedproxy 0.4.0

• Release version for CoTP Discussion paper

sedproxy 0.3.1

• Added a NEWS.md file to track changes to the package.
• ClimToProxyClim now takes a ts object for the input climate signal.
• Bioturbation weights now take the thickness of the layer from which samples were picked/extracted into account when determining the time period over which a proxy integrates the climate signal. This is controlled by the new argument layer.width

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.