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Fixed a bug on sobol_matrices that caused the function to fail when a single parameter was passed into the “params” argument.
Added a line in the help page of the sobol_indices and sobol_dummy functions informing that the Y argument does not accept NA or NaN values in the model output.
Arnald Puy, Samuele Lo Piano, Andrea Saltelli, and Simon A. Levin. sensobol: an R package to compute variance-based sensitivity indices. Journal of Statistical Software 102.5 (2022), pp. 1-37. doi: 10.18637/jss.v102.i05
Added a help page for the package.
Corrected a bug in sobol_ode.
The function plot_sensobol
has been eliminated. Now the Sobol’ indices can be plot by a single call to plot
.
Third-order indices are now referred to as Sijl
rather than Sijk
.
The function sobol_convergence
has been added to check the convergence of Sobol’ indices across sub-samples of the model output.
The output of sobol_indices
is now an object of class sensobol
. Besides including the indices, it also informs on the sum of first-order effects, the estimators used in the computation and the total number of model runs.
The output of vars_to
is now an object of class vars
. Besides including the indices, it also informs on the number of stars and the h value used.
The function plot_sobol
is deprecated and will be removed from future versions. Now the output of sobol_indices
can be printed with a call to plot
.
This is a major package upgrade.
The package now includes four first-order (Sobol’, Salteli, Jansen and Azzini) and eight total-order (Jansen, Sobol’, Homma, Saltelli, Janon, Glen, Azzini and VARS-TO) sensitivity estimators.
The sample matrix can be constructed either with Sobol’ quasi-random numbers, a latin hypercube design or random numbers.
Several functions to plot the results of the uncertainty and sensitivity analysis have been incorporated: the function plot_scatter
plots the model inputs against the output, whereas the function plot_multiscatter
plots x_i against x_j and maps the resulting coordinate to its respective model output value.
The package can now be used in models with either a scalar or a multivariate output.
This release prepares the users for a major upcoming improvement of the package.
Added warnings to the function sobol_matrices
. The arguments n
and k
will be substituted by N
and params
in the next release of the package. The arguments second
and third
will be substituted by the argument order
in the next release of the package.
Added warnings to the functions plot_uncertainty
, plot_scatter
, sobol_dummy
and sobol_indices
. The argument n
will be substituted by N
in the next release of the package.
The function sobol_ci
is deprecated. The computation of confidence intervals will be done directly by sobol_indices
in the next version of the package.
The function sobol_ci_dummy
is deprecated. The computation of confidence intervals for dummy parameters will be done directly by sobol_dummy
in the next version of the package.
The function sobol_replicas
is deprecated and will be removed in the next version of the package.
The test function ishigami_Mapply
would be renamed as ishigami_Fun
in the next release of the package.
Corrected a bug in the plot_uncertainty
function. Now the function demands to add the initial sample size n
to visualize the model output uncertainty.
Corrected some functions to adapt them to data.table 1.12.4.
Added a new function (sobol_replicas
) to easily extract the bootstrapped Sobol’ indices.
New option in the sobol_matrices
function: the option cluster
allows to create Sobol’ matrices for clusters of parameters.
Added references to all test functions.
The vignette rendered wrongly in the previous version; now the issue is corrected.
Some functions that were exported to the R package manual are now internal.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.