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signalHsmm predicts presence of signal peptides in eukaryotic proteins using hidden semi-Markov models. The implemented algorithm can be accessed as a web-based service http://smorfland.uni.wroc.pl/shiny/signalHsmm/.
signalHsmm can be also used locally as the R package. It can be installed from CRAN using:
install.packages("signalHsmm")You can install the latest development version of the package directly from github:
source("https://install-github.me/michbur/signalHsmm")After the installation, the GUI can be accessed locally:
library(signalHsmm)
gui_signalHsmm()All signalHsmm functionalities can be also invoked in the batch mode, for example:
run_signalHsmm(benchmark_dat[1:10])These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.