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match.arg()
calls in sim_do_pedigree()
and sim_dof1_pedigree()
.Added dataset, mouseL_cox and mouseL_mgi, with mouse chromosome lengths in cM.
collapse_do_alleles() now removes any redudant crossovers (adjacent alleles that are the same.
In C++, avoid calling runif() with n=0, and require Rcpp 0.12.17 (regarding handling of random number generation)
Byte-compile the R code
Added palette
argument to CCcolors()
. Default is to return my revised CC colors. CCcolors("orig")
gives the original, official colors.
The chrlength
argument for plot_ind()
can be a vector of length 2, in which case the two chromosomes will be different lengths but aligned at the top. This is to allow illustratation of the X and Y chromosomes in males.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.