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sivirep: Data Wrangling and Automated Reports from 'SIVIGILA' Source

Data wrangling, pre-processing, and generating automated reports from Colombia's epidemiological surveillance system, 'SIVIGILA' <https://portalsivigila.ins.gov.co/>. It provides a customizable R Markdown template for analysis and automatic generation of epidemiological reports that can be adapted to local, regional, and national contexts. This tool offers a standardized and reproducible workflow that helps to reduce manual labor and potential errors in report generation, improving their efficiency and consistency.

Version: 1.0.0
Depends: R (≥ 4.0.0)
Imports: config, dplyr, ggplot2, httr2, stringr, xml2, epitrix, sf, readxl, rlang, tools, sysfonts, showtext, kableExtra
Suggests: knitr, rmarkdown, spelling, testthat (≥ 3.0.0)
Published: 2024-11-14
DOI: 10.32614/CRAN.package.sivirep
Author: Geraldine Gómez-Millán ORCID iD [aut, cre, ctb], Zulma M. Cucunubá ORCID iD [aut, ctb], Jennifer A. Mendez-Romero ORCID iD [aut, ctb], Claudia Huguett-Aragón ORCID iD [aut, ctb], Hugo Gruson ORCID iD [ctb], Juanita Romero-Garcés ORCID iD [ctb], Jaime Pavlich-Mariscal ORCID iD [ctb], Laura Gómez Bermeo ORCID iD [ctb], Andrés Moreno ORCID iD [ctb], Miguel Gámez [ctb], Johan Calderón [ctb], Lady Flórez-Tapiero [ctb], Verónica Tangarife-Arredondo [ctb], Gerard Alarcon [ctb], International Development Research Center (IDRC) [fnd], Pontificia Universidad Javeriana [cph]
Maintainer: Geraldine Gómez-Millán <geralidine.gomez at javeriana.edu.co>
BugReports: https://github.com/epiverse-trace/sivirep/issues
License: MIT + file LICENSE
URL: https://epiverse-trace.github.io/sivirep/, https://github.com/epiverse-trace/sivirep
NeedsCompilation: no
Language: es_ES
Materials: README NEWS
CRAN checks: sivirep results [issues need fixing before 2024-12-05]

Documentation:

Reference manual: sivirep.pdf
Vignettes: sivirep (source, R code)

Downloads:

Package source: sivirep_1.0.0.tar.gz
Windows binaries: r-devel: sivirep_1.0.0.zip, r-release: sivirep_1.0.0.zip, r-oldrel: sivirep_1.0.0.zip
macOS binaries: r-release (arm64): sivirep_1.0.0.tgz, r-oldrel (arm64): sivirep_1.0.0.tgz, r-release (x86_64): sivirep_1.0.0.tgz, r-oldrel (x86_64): sivirep_1.0.0.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=sivirep to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.