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roxygen2
issue #1491.slurmr that overwrites
source file when located in the same folder.get_tmp_path,
get_job_name, and get_job_id. This is a fix
for issue #29 (first reported by @thistleknot.)sourceSlurm(plan = "collect") won’t wait
forever.
More verbose error messages when Slurm_collect
returns with errors.
The function sacct() now doesn’t fail when
accounting is not available.
slurmR now has a Dockerimage that can be used to test with a Slurm cluster. The docker image can be started from within R (if Docker is available).
makeSlurmCluster()s default tmp_path is now
opts_slurmR$get_tmp_path().
New functions slurmr_docker_* provide a wrapper to
interact with the Dockerimage of slurmR.
Minor release.
Added a preamble option for Slurm batch scripts.
This allows the user to specify commands that need to be added to the
script, e.g., module load.
preamble can be specified via
opts_slurmR$set_preamble() or directly when calling
Slurm_*apply.
Added the function opts_slurmR$reset().
sourceSlurm() was using a file created at
tempdir() which was deleted, and thus, unavailable to be
used by sbatch. Tempfiles like those are now created at
dirname(tempdir()).Minor release.
Fixed bug when collecting failed jobs. slurmR would fail to correctly list failed jobs and thus to collect outputs. This would also would affect when trying to collect partially resubmitted jobs.
Slurm options passed via opts_slurmR are now passed
to Slurm_*apply as documented. Thanks to Gregory Penn
(gregorypenn) who reported the bug.
slurmr_cmd now expands the
cmd_path.
Increased code coverage.
The function wait_slurm() is now exported and
documented.
Each line in the written R script is now wrapped with a custom
tryCatch function (tcq). On error, this new
function will collect both the expression called, the error message, and
will quit the R session, so now the user has a better description of
possible errors, e.g. missing packages.
sluRm to slurmR.NEWS.md file to track changes to the
package.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.