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stacomiR 0.6.1

• fixed problems with vignette in MacOSX
• fixed problems with Rcheck (manual, old rd artifact, tests …)
• fixed deprecated aes_string in ggplot2
• fixed problems with arguments in two methods manual (CRAN note)
• report_mig now only uses a function from report_mig_interannual and not longer runs its connect method, this simplifies the loading.
• fix bug due to change in behaviour after using dbwrite table which now creates a table with local timestamp and cause values to shift one day in report_mig_interannual when inserting from the temporary table
• dev added information for user about the current connexion (host, dbname) in report_mig_mult when silent = FALSE
• dev added info about the number of lines in supprime (report_mig_interannual) and write_database (report_mig)
• fix bug when calling plot(report_sample_char) the values where always collected from envir_stacomi.
• fix bug in plot standard report mig char.
• test added test test coverage now increases to 85 %.
• fix #30 missing month in summary report_mig_interannual
• fix problem of vignette building in mac_OSX
• test trouble with codecovr during tests
• fix #31 Report_annual does not issue a count when no data are present in the db for one year
• dev #14 Added function to get schema list
• dev #19 Choose year of reference in report_mig_interannual
• fix bug in plot.report_mig_mult standard some colors not printed due to changed name.
• fix bug in plot report mig mult wrong legend for standard graph (glass eel was OK)

stacomiR 0.6.0.7

• created function to load schema
• fixed problem with report_mig_char example (broken since new qualitative parameter for age was inserted in the database)
• fixed problem with x scale ugly https://forgemia.inra.fr/stacomi/stacomir/-/issues/27 fixed

stacomiR 0.6.0.6

• allows to load ggplots after plot for report_dc and report_df
• fixes the problem of method for plot no longer working with signature(x = “report_dc”, y = “ANY”) and changed to “missing”
• allows to pass arguments for colors in plot.report_dc
• fixed problems with broken translation see https://forgemia.inra.fr/stacomi/stacomir/-/issues/20

stacomiR 0.6.0.5

• fixes the way environmental stations are loaded.

stacomiR 0.6.0.4

• fixed different output for parameters between charge and charge_with_filter from ref_parquan and ref_parqual.
• the choice_c method also assigns subclasses in envir_stacomi.
• updated the set_as_qualitative method to avoid bugs when running it several times.
• rewrote tests

stacomiR 0.6.0.3

• fixed problems for report interannual, allowing it for several DC including the graphs
• fixed but in report_mig / report_mig_mug write database for numbers of type “PONCTUEL”
• fixed problem in report_interannual, always writing the db when there is a difference between report_mig and report_annual e.g. when operations are overlapping between years

stacomiR 0.6.0.2

• fixes the way taxa and stage are loaded
• replaced some french labels in slots

stacomiR 0.6.0.1

• Minor fix for Solaris, non portable path ‘~’ now issue a warning asking the user for a new path
• Code coverage 79.2 %

stacomiR 0.6.0

stacomir based on gwidget was dropped from CRAN in May 2020, it has been completely reprogrammed to remove all dependence to gwidget and the graphical interface will be a new shiny package (under developpement). Stacomirtools has been rewritten and submitted to CRAN to connect via pool and DBI.

• added import to package rlang
• Change to adapt to new dplyr format dplyr:n() instead of n() see dplyr breaking change in version 1.0.0
• adapted to stacomirtools new connection and connection options (using pool and DBI instead of RODC)
• removed all dependency to gwidgetRGTK2 so in practise there is no longer a graphical interface, the shiny package is due soon.
• added code of conduct
• rewrote unit tests increased coverage from 50 to 78 %

stacomiR 0.5.4.4 (not released on CRAN)

• added import to package rlang
• Change to adapt to new dplyr format dplyr:n() instead of n() see dplyr breaking change in version 1.0.0

stacomiR 0.5.4.3

• fixed problem when report with just one line in one year where total number is zero
• fixed bug in monthly report when there is just a single month
• fixed new bug in report_interannual where no value returned from the database created a character which was crashing the program
• fixed bug in bilan interannual when quantiles were calculated on a single line, now reports exactly the value of that line for all quantiles and avoid crashes.
• fixed problem in plot,report_sample_char,missing-method, a … additional was documented but not present (sent from CRAN)
• The vignette crashes as the program finds difference between rounded numbers, while I don’t understand why, round(sum(datasub\(value, na.rm = TRUE), 2) and round(sum(datasub2\)value, na.rm = TRUE), 2) are not equal: and provide a difference that is not rounded (e.g. 0.000996741) I have changed the test.

stacomiR 0.5.4.2

• fixed new issues with rounding error when building vignette

stacomiR 0.5.4.1

• fixed issue with prototype generating check warning on CRAN

stacomiR 0.5.4.0

• removed reference to test database, and use of dplyr for internal calculations. Trying to launch as test database with postgres failed on distant computers for tests…. (@marion #484-502)

• Updated testhat tests (@marion @cedric #502-506)

• developped vignette for package (@marion #480-484)

stacomiR 0.5.3.2

• changed stacomiR-package.md according to Kurt Hornik (CRAN) demand to use macro in share (@cedric #481)

• bug in interface report_dc corrected (@cedric #489)

• Problem with ceilPOSIXt now named only ceil in package Hmisc. (@cedric #489)

stacomiR 0.5.3.1

• added and edited readme.Rmd file (@cedric and @marion #447-#452)

• compilation of messages, fixes bug for for some year in report_mig_mult (@cedric #444)

• Editing translation messages (@cedric #446)

• fix bug for setasqualitative method in report_sea__age (@cedric #443)

• updated documentation (@cedric #440)

• Modification in glass eel graph (@cedric #441)

• changes to the summary-report_mig_interannual-method (@cedric # 439)

• change to the presentation page in R-forge (@timothée #425 #436-#438)

stacomiR 0.5.3

• Language with poedit (@cedric and @timothee).

• suppress all assignments to .globalEnv.

• adapt documentation and package to pass with zero warning and zero note.

stacomiR 0.5.2 (R-Forge)

• Development of the command line interface (@cedric)

• Adaptation to the database change to adapt French SANDRE directives (@cedric)

• added 4 new report (silver eel, sea age, report_mig_mult, report_annual) and adapted all old script to use in both command line and graphical interface. (@ cedric and @marion)

stacomiR 0.5.1 (R-Forge)

• tests with testthat (@cedric)

stacomiR 0.5.0 (R-Forge)

• Roxygen documentation (@cedric)

stacomiR 0.4 (R-Forge)

• classes adapted to the new database format

stacomiR 0.3 (R-Forge)

• Adapting to one schema per user in the postgres database

• initial development of all classes following version 0.3 of the database

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.