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readRabbit
now reads input files produced by the open
source version of RABBIT, available at https://github.com/Biometris/RABBITcalcIBD
objects
with an identical number of genotypes is fixed.plot
function is fixed. The “singleGeno”
plots now show the correct probabilities.writeIBDs
) and reading
IBD (readIBDs
) probabilities to a custom format have been
added. The format is explained in a new vignette
vignette("IBDFileFormat", package = "statgenIBD")
.IBDprob
, a
plot showing the mean coverage of each parent across the population
(plotType = "meanProbs"
) and a plot showing the total
coverage of each parent (plotType = "totalCoverage"
).calcIBD
no longer have a
leading “p”.readRabbit
, for reading output from the
RABBIT software for computing IBDs for complex crosses, is moved here
from statgenMPP
.IBDprob
by specifying
plotType = "pedigree"
.plotType
that can have values “singleGeno”, for the
original plot, and “allGeno” for a new plot showing probabilities for
all genotypes in a single plot.These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.