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Include functions to rapidly build accurate genetic prediction models for genome-wide association or whole-genome sequencing study data by smooth-threshold multivariate genetic prediction (STMGP) method.
To install: install.packages("stmgp")
Ueki M, Tamiya G, and for Alzheimer’s Disease Neuroimaging Initiative. (2016) Smooth-thresholdmultivariate genetic prediction with unbiased model selection. Genet Epidemiol 40:233-43. https://doi.org/10.1002/gepi.21958 Ueki M. (2009) A note on automatic variable selection using smooth-threshold estimating equations. Biometrika 96:1005-11. https://doi.org/10.1093/biomet/asp060
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.