The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

strawr

Straw is a fast implementation of reading/dump for .hic files

Installation

remotes::install_github("aidenlab/straw/R")

Usage

# <NONE/VC/VC_SQRT/KR> <hicFile(s)> <chr1>[:x1:x2] <chr2>[:y1:y2] <BP/FRAG> <binsize>
hic.data.frame <- strawr::straw("KR", "/path/to/file.hic", "11", "11", "BP", 10000)

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.