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syncons: Efficient and Low-Cost Construction of Synthetic Communities

Provides functions and a Shiny application to design plate layouts for constructing synthetic communities (SynComs) from a pool of strains using 24-, 96- and 384-well microplates. The method generates all possible strain combinations in a scalable, low-cost workflow suitable for high-throughput experiments. Reference: Tian et al. (2024) <doi:10.21769/BioProtoc.2405576>.

Version: 0.1.1
Depends: R (≥ 4.1.0)
Imports: dplyr, DT, glue, purrr, shiny, stringr, tibble, tidyr, utils
Published: 2026-08-05
DOI: 10.32614/CRAN.package.syncons (may not be active yet)
Author: Chun-Hui Gao ORCID iD [aut, cre]
Maintainer: Chun-Hui Gao <gaospecial at gmail.com>
BugReports: https://github.com/gaospecial/syncons/issues
License: GPL (≥ 3)
URL: https://github.com/gaospecial/syncons, https://doi.org/10.21769/BioProtoc.2405576, https://bio-spring.shinyapps.io/SynComsConstructor/
NeedsCompilation: no
Materials: README
CRAN checks: syncons results

Documentation:

Reference manual: syncons.html , syncons.pdf

Downloads:

Package source: syncons_0.1.1.tar.gz
Windows binaries: r-devel: not available, r-release: not available, r-oldrel: not available
macOS binaries: r-release (arm64): syncons_0.1.1.tgz, r-oldrel (arm64): syncons_0.1.1.tgz, r-release (x86_64): syncons_0.1.1.tgz, r-oldrel (x86_64): syncons_0.1.1.tgz

Linking:

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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.