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tAI: The tRNA Adaptation Index

Functions and example files to calculate the tRNA adaptation index, a measure of the level of co-adaptation between the set of tRNA genes and the codon usage bias of protein-coding genes in a given genome. The methodology is described in dos Reis, Wernisch and Savva (2003) <doi:10.1093/nar/gkg897>, and dos Reis, Savva and Wernisch (2004) <doi:10.1093/nar/gkh834>.

Version: 0.2.2
Published: 2025-04-16
DOI: 10.32614/CRAN.package.tAI
Author: Mario dos Reis [aut, cre]
Maintainer: Mario dos Reis <mariodosreis at gmail.com>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: no
Materials: README
CRAN checks: tAI results

Documentation:

Reference manual: tAI.pdf

Downloads:

Package source: tAI_0.2.2.tar.gz
Windows binaries: r-devel: tAI_0.2.2.zip, r-release: tAI_0.2.2.zip, r-oldrel: tAI_0.2.2.zip
macOS binaries: r-release (arm64): tAI_0.2.2.tgz, r-oldrel (arm64): tAI_0.2.2.tgz, r-release (x86_64): tAI_0.2.2.tgz, r-oldrel (x86_64): tAI_0.2.2.tgz

Linking:

Please use the canonical form https://CRAN.R-project.org/package=tAI to link to this page.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.