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Functions and example files to calculate the tRNA adaptation index, a measure of the level of co-adaptation between the set of tRNA genes and the codon usage bias of protein-coding genes in a given genome. The methodology is described in dos Reis, Wernisch and Savva (2003) <doi:10.1093/nar/gkg897>, and dos Reis, Savva and Wernisch (2004) <doi:10.1093/nar/gkh834>.
Version: | 0.2.2 |
Published: | 2025-04-16 |
DOI: | 10.32614/CRAN.package.tAI |
Author: | Mario dos Reis [aut, cre] |
Maintainer: | Mario dos Reis <mariodosreis at gmail.com> |
License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | tAI results |
Reference manual: | tAI.pdf |
Package source: | tAI_0.2.2.tar.gz |
Windows binaries: | r-devel: tAI_0.2.2.zip, r-release: tAI_0.2.2.zip, r-oldrel: tAI_0.2.2.zip |
macOS binaries: | r-release (arm64): tAI_0.2.2.tgz, r-oldrel (arm64): tAI_0.2.2.tgz, r-release (x86_64): tAI_0.2.2.tgz, r-oldrel (x86_64): tAI_0.2.2.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.