The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.
The goal of tidyheatmaps is to simplify the generation of publication-ready heatmaps from tidy data. By offering an interface to the powerful pheatmap package, it allows for the effortless creation of intricate heatmaps with minimal code. By offering an interface to the powerful pheatmap package, it allows for the effortless creation of intricate heatmaps with minimal code.
You can install the released version of tidyheatmaps from CRAN with:
And the development version from GitHub with:
Given a tidy data frame of gene expression data like data_exprs, you can easily generate a customized heatmap. The full documentation can be found here.
library(tidyheatmaps)
tidyheatmap(data_exprs,
rows = external_gene_name,
columns = sample,
values = expression,
scale = "row",
annotation_col = c(sample_type, condition, group),
annotation_row = c(is_immune_gene, direction),
gaps_row = direction,
gaps_col = group
)
tidyplots relies on a number of fantastic packages that do all the heavy lifting behind the scenes. These include dplyr, pheatmap, rlang, grDevices, tidyr, tibble and RColorBrewer.
These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.