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methods::setClassUnion()
to fix R check
(2023-12-12, Tue)setOldClass()
, which suppose to fix the
#47 issue (2023-11-29, Wed)parent()
,
child()
, tree_subset()
, etc.) from the
‘treeio’ package (2023-08-03, Thu, #44)valid.edge()
to avoid warning (2023-7-18,
Tue)citEntry()
to
bibentry()
(2023-07-14, Fri, #38)print()
method for ‘tbl_tree’ object to avoid
confusion with tbl_df
(2023-07-12, Wed)dots
issue of left_join
(2022-12-16, Fri, #30, #31)yulab.utils::str_wrap
to print tree (2021-10-09,
Sat)select
, filter
, mutate
,
left_join
, unnest
, pull
and
rename
verbs for treedata
object (2021-08-22,
Sun; @xiangpin,
#19)print
and show
methods for
treedata
options(show_data_for_treedata=TRUE)
to control
whether show associated data (2021-08-20, Fri; @xiangpin, #18)merge
method for tbl_tree
object
(2020-07-03, Fri)
data_frame
according to the change of tibble
(v=3.0.0)tibble
instead of data_frame
as it was
deprecated in tibble (v=3.0.0) (2020-04-02, Thu)groupOTU
: set group from 0 to NA if only root node is
in group of 0 (2019-11-25, Mon)offspring
supports a vector of node ids (2019-11-21,
Thu)nodelab
filter
and select
methods for
ggtree
object (2019-10-31, Thu)offsprint(tip, self_include=TRUE)
will return the input
tip (2019-10-06, Sun)offspring
to compatible with missing nodes,
e.g. for tree after ggtree::collapse
(2019-09-16, Mon)MRCA
with only one node and will return
the node itself (2019-08-30, Fri)nodeid
and nodelab
methods for converting
from label to node number and vice versa (2019-08-09, Fri)child.tbl_tree
instead of child
in
offspring
, (2019-02-26, Tue) so that it works more robust
for data.frame
.offspring
(2019-01-28, Mon)mutate.tbl_tree
method (2018-12-19, Wed)
child
tibble
v = 2.0.0 (2018-11-29, Thu)
as_data_frame
method to as_tibble
since as_data_frame
was deprecated in tibble
and not exported as genericsas_data_frame.phylo
works with
phylo$root.edge
(2018-06-13, Wed)get_tree_data(treedata)$node
to be integer
(2018-04-19, Thu)get.data
, [
and [[
methods
(2018-02-26, Mon)These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.