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Uses read counts for biallelic single nucleotide polymorphisms (SNPs) to compare the likelihoods for the observed read counts given that a sample is either diploid or triploid. It allows parameters to be specified to account for sequencing error rates and allelic bias. For details of the algorithm, please see Delomas (2019) <doi:10.1111/1755-0998.13073>.
| Version: | 0.1.0 |
| Imports: | stats |
| Published: | 2019-08-28 |
| Author: | Thomas Delomas [aut, cre] |
| Maintainer: | Thomas Delomas <thomas.delomas at idfg.idaho.gov> |
| BugReports: | https://github.com/delomast/tripsAndDipR/issues |
| License: | MIT + file LICENSE |
| URL: | https://github.com/delomast/tripsAndDipR |
| NeedsCompilation: | no |
| CRAN checks: | tripsAndDipR results |
| Reference manual: | tripsAndDipR.pdf |
| Package source: | tripsAndDipR_0.1.0.tar.gz |
| Windows binaries: | r-devel: tripsAndDipR_0.1.0.zip, r-release: tripsAndDipR_0.1.0.zip, r-oldrel: tripsAndDipR_0.1.0.zip |
| macOS binaries: | r-release (arm64): tripsAndDipR_0.1.0.tgz, r-oldrel (arm64): tripsAndDipR_0.1.0.tgz, r-release (x86_64): tripsAndDipR_0.1.0.tgz, r-oldrel (x86_64): tripsAndDipR_0.1.0.tgz |
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These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.