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ukbtools 0.11.3

Corrected functionality:

Updated earlier typo/change that made ukb_df incorrectly convert all column types to character (caused by replacing stringr::str_interp to stringr::str_c when passing internal column type vector to data.table::fread, without updating argument)

Bug fix:

Cleared bug in ukb_icd_freq_by for disease frequency against a quantitative trait.

Made ukb_df column name from description regex find/replace more general to capture all variations of “uses data coding”

Updated functionality:

ukb_icd_keyword internal regex search ignore.case defaults to TRUE, with and option to set added to arguments.

ukbtools 0.11.1

Test data:

Added example UKB data ukbXXXX.tab, ukbXXXX.r, ukbXXXX.html to test the ‘read’ and ‘summarise’ functionality ukb_df, ukb_df_field, and ukb_context. See the section “An example fileset” in the vignette for details.

Updated functionality:

ukb_icd_freq_by with freq.plot = TRUE plots a barplot for categorical reference variables, and plots diagnosis frequencies at the midpoint of each group for quantitative reference variables.

Webpage:

The ukbtools webpage has been rebuilt with pkgdown and includes the vignette under the Articles tab.

ukbtools 0.11.0

Updated functionality:

Defunct functionality:

New functionality:

ukbtools 0.10.1

Bug fix:

ukbtools 0.10.0

New functionality:

Updated functionality:

ukbtools 0.9.0

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.