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Li Z (2024). “vcfpp: a C++ API for rapid processing of the variant call format.” Bioinformatics, 40(2), btae049. ISSN 1367-4811, doi:10.1093/bioinformatics/btae049.

Corresponding BibTeX entry:

  @Article{,
    title = {vcfpp: a C++ API for rapid processing of the variant call
      format},
    author = {Zilong Li},
    journal = {Bioinformatics},
    volume = {40},
    number = {2},
    pages = {btae049},
    year = {2024},
    month = {01},
    issn = {1367-4811},
    abstract = {Given the widespread use of the variant call format
      (VCF/BCF) coupled with continuous surge in big data, there
      remains a perpetual demand for fast and flexible methods to
      manipulate these comprehensive formats across various programming
      languages.This work presents vcfpp, a C++ API of HTSlib in a
      single file, providing an intuitive interface to manipulate
      VCF/BCF files rapidly and safely, in addition to being portable.
      Moreover, this work introduces the vcfppR package to demonstrate
      the development of a high-performance R package with vcfpp,
      allowing for rapid and straightforward variants analyses.vcfpp is
      available from https://github.com/Zilong-Li/vcfpp under MIT
      license. vcfppR is available from
      https://cran.r-project.org/web/packages/vcfppR.},
    doi = {10.1093/bioinformatics/btae049},
  }

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