The hardware and bandwidth for this mirror is donated by METANET, the Webhosting and Full Service-Cloud Provider.
If you wish to report a bug, or if you are interested in having us mirror your free-software or open-source project, please feel free to contact us at mirror[@]metanet.ch.

PDF reports

PDF reports

to_pdf_report() produces a multi-page US-Letter-landscape PDF combining the venn diagram, UpSet plot, statistics tables, network view, and a methodology page — equivalent to the web tool’s “Generate Report” button.

library(vennDiagramLab)
result <- analyze(load_sample("dataset_real_cancer_drivers_4"))

Generating the report

Save to a temporary file (vignettes shouldn’t write into the package directory):

out <- tempfile(fileext = ".pdf")
to_pdf_report(result, path = out, title = "Cancer driver overlap")
file.exists(out)
file.size(out)   # bytes

(The chunk above is gated on R >= 4.6 because the report embeds an UpSet panel via ComplexUpset, whose CRAN release (1.3.3) is incompatible with ggplot2 >= 4.0 on older R. See ?vennDiagramLab::to_pdf_report for context and workarounds.)

What the report contains

By default, every report has 5 page types:

  1. Overview — metadata (timestamp, dataset, set count) + set-size table.
  2. Venn + UpSet — rasterized venn (left) + UpSet plot (right).
  3. Statistics — Jaccard / Dice / Hypergeometric tables (per-page on 7+ sets).
  4. Network — set-relationship graph + significant edges list.
  5. About — methodology notes (Venn / UpSet / Network / metric definitions).

Pages 4 (network) and 5 (about) can be turned off:

to_pdf_report(result, "venn_only.pdf",
              include_network = FALSE,
              include_about   = FALSE)

What’s next

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.