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xpose.xtras

xpose.xtras 0.2.0

New features

• xp_from_bbr() converts a ‘bbr’ model directly into an xp_xtras object.
• New parameter/covariate association system (add_cov_association(), prm_cov() family) with xplot_forest() / cov_forest() visualization; see the new parameter-associations vignette.
• cormat() visualizes the parameter correlation/covariance matrix, for both NONMEM and nlmixr2 models.
• catdv_vs_occ() and catdv_vs_ipred() add categorical DV diagnostic plots (observed-vs-predicted trend across occasions, and binned calibration).
• left_join_x() backfills missing variables into an xpdb via a coalescing left join.
• Default label overrides, plot watermarking, and a flexible save wrapper (set_default_labs(), add_watermark(), ggsave_xp()), configurable via set_xtras_options() and auto-applied on print/save. See the new plot-output vignette.
• patch_condn() corrects ‘xpose’s condition number calculation for multi-method NONMEM runs, applied automatically byas_xpdb_x()`.
• focus_function() / focus_qapply() now support output-generating functions (plots, tables), not just xpdb-transforming ones.
• New logLik(), AIC(), and BIC() methods for xpose_data and xpose_set objects.
• ind_plots_sample() plots a representative (optionally stratified) sample of individuals instead of the whole dataset.
• plot.xpose_data() runs a configurable batch of diagnostic plots in one call.
• process_preset() family saves and replays a reusable xpdb processing pipeline by name, optionally persisted across sessions.

Bug fixes

• set_dv_probs() no longer crashes when .problem is omitted.
• conflicted preferences are now re-applied regardless of package attach order, fixing spurious “found in 2 packages” errors.
• Fixed inconsistent ‘cli’ message coloring caused by a color-formatting helper being evaluated at install time instead of call time.
• Fixed a title/description typo in %p%.
• Fixed misleading default subtitle/caption labels on model-averaged plots, which previously reported statistics from just one of the averaged models.
• Fixed as_xpdb_x() / check_xpdb_x() erroring on xpose_data objects with no table data.
• Fixed xplot_pairs() silently ignoring a custom catcont_opts$other_fun, and removed an unreachable leftover duplicate-axis-label block in roc_by_mod().

xpose.xtras 0.1.4

• nlmixr2 example datasets replaced with on-demand nlmixr_example() / nlmixr2_example() to avoid loading nlmixr2est when not installed.

xpose.xtras 0.1.3

• Fix for nlmixr2 compatibility checks when nlmixr2est is not installed.

xpose.xtras 0.1.2

• Additional changes relevant to 0.1.1.

xpose.xtras 0.1.1

• Minor compatibility changes for nlmixr2 5.0

xpose.xtras 0.1.0

• Bugs regarding covariate plotting functions were resolved.
• nlmixr2 compatibility implemented
• ROC curve plots added
• Updated documentation and pkgdown site

xpose.xtras 0.0.3

• Patch to support ‘ggplot2’ 4.0.0 release.
• Bugfixes for ‘xpose’ related to ‘ggplot2’ also implemented in a backwards compatible way.
• Contact email changed.

xpose.xtras 0.0.2

• CRAN release planned

xpose.xtras 0.0.1

• Early post-development version
• Completed unit tests and ongoing fixes to bugs and documentation.

These binaries (installable software) and packages are in development.
They may not be fully stable and should be used with caution. We make no claims about them.